Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   UB51_RS19725 Genome accession   NZ_CP010976
Coordinates   4313828..4315195 (-) Length   455 a.a.
NCBI ID   WP_044878749.1    Uniprot ID   A0A0D3VDA7
Organism   Paenibacillus sp. IHBB 10380     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4308828..4320195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UB51_RS19700 (UB51_19695) ispD 4309267..4309965 (-) 699 WP_044878744.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  UB51_RS19705 (UB51_19700) - 4310077..4311165 (-) 1089 WP_044878745.1 PIN/TRAM domain-containing protein -
  UB51_RS19710 (UB51_19705) - 4311387..4311782 (+) 396 WP_044878746.1 hypothetical protein -
  UB51_RS19715 (UB51_19710) pssA 4311956..4312684 (-) 729 WP_044878747.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  UB51_RS19720 (UB51_19715) disA 4312738..4313814 (-) 1077 WP_044878748.1 DNA integrity scanning diadenylate cyclase DisA -
  UB51_RS19725 (UB51_19720) radA 4313828..4315195 (-) 1368 WP_044878749.1 DNA repair protein RadA Machinery gene
  UB51_RS19730 (UB51_19725) clpC 4315448..4317910 (-) 2463 WP_044878750.1 ATP-dependent protease ATP-binding subunit ClpC -
  UB51_RS19735 (UB51_19730) - 4317972..4319039 (-) 1068 WP_044878751.1 protein arginine kinase -
  UB51_RS19740 (UB51_19735) - 4319060..4319584 (-) 525 WP_044878752.1 UvrB/UvrC motif-containing protein -
  UB51_RS19745 (UB51_19740) - 4319612..4320073 (-) 462 WP_044878753.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49464.17 Da        Isoelectric Point: 6.7589

>NTDB_id=141031 UB51_RS19725 WP_044878749.1 4313828..4315195(-) (radA) [Paenibacillus sp. IHBB 10380]
MAKGKTKFFCSECGYETPKWYGKCPGCQAWNSMVEESTVVVKTQGMNSSIFQSKEKPLSIINIESSKEDRVDTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHSLSISGLRVLYISGEESVRQTKLRADRLGALSPELYVLCETNMEAIEEA
IESIQPQFLVIDSIQTVYLPEVTSAPGSVSQVRECTARFMRVSKGMGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEVGLTEVENPSELFLSERPLGVAGSTVVASVEGTRPVLVELQALITPTHFPS
PRRMCTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDLPTKPYDVFFGEVGLTGE
VRGVSRAEQRVKEAEKLGFKRVILPEKSLKGWKHPKGIELVGVTTVAKALSVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=141031 UB51_RS19725 WP_044878749.1 4313828..4315195(-) (radA) [Paenibacillus sp. IHBB 10380]
ATGGCTAAAGGTAAAACAAAGTTTTTTTGTAGTGAATGTGGATATGAAACTCCAAAATGGTATGGTAAATGCCCGGGGTG
TCAGGCTTGGAATTCAATGGTAGAAGAGTCTACGGTAGTCGTTAAGACACAAGGCATGAATTCTTCTATTTTTCAGAGTA
AAGAAAAGCCGCTCTCCATCATAAATATAGAGAGCAGTAAAGAAGACAGAGTGGATACCGGTATTGGTGAATTGAATCGG
GTATTAGGTGGAGGCATTGTTCCAGGTTCACTTGTTCTAGTAGGTGGTGATCCCGGGATAGGAAAGTCGACTTTATTACT
TCAAACTTCACATTCTTTATCAATATCAGGCCTACGGGTACTTTATATATCAGGGGAAGAATCGGTACGACAAACGAAAT
TACGCGCTGATCGATTAGGTGCGCTCTCTCCTGAGCTGTACGTATTATGTGAAACGAATATGGAAGCTATAGAAGAAGCT
ATTGAAAGTATTCAACCTCAATTTTTAGTTATTGATTCTATTCAGACTGTTTATTTACCTGAAGTCACCAGTGCACCAGG
TAGTGTATCTCAAGTAAGGGAATGTACAGCTCGATTTATGCGTGTCTCTAAAGGTATGGGTATTGCTACGGTATTAGTGG
GTCATGTGACCAAGGAAGGTGCTATTGCAGGACCTAGAATGCTTGAGCACATGGTAGACTGCGTTCTTTATTTTGAAGGA
GAACGTCATCATACTTATAGATTGCTGAGAGCCGTTAAGAATCGGTTTGGCTCAACGAATGAAATTGGTATTTTTGAAAT
GGGTGAGGTGGGGTTAACTGAGGTAGAGAACCCATCAGAGCTATTTCTCTCAGAGCGTCCCCTTGGCGTAGCTGGTTCAA
CAGTCGTGGCTAGTGTCGAAGGAACAAGGCCTGTACTCGTGGAGTTGCAGGCACTGATTACACCTACTCATTTTCCATCC
CCAAGACGCATGTGTACCGGAATAGATCATCATCGAATGGGACTCATTATTGCTGTATTAGAGAAAAGAATGGGCATGTT
TCTTCAGAATCAAGATGCTTATCTAAACGTTGCGGGTGGTGTGAAGCTTGATGAACCTGCAGTAGATTTGGCGATTGCAG
TCAGCATTGCCTCCAGTTTTCGCGATTTACCGACAAAACCCTATGATGTCTTTTTTGGAGAAGTGGGATTAACAGGGGAA
GTCAGAGGTGTATCTCGTGCCGAGCAACGGGTGAAGGAAGCTGAGAAGTTAGGGTTTAAGAGAGTTATTTTACCGGAGAA
AAGCTTAAAAGGATGGAAGCATCCCAAAGGAATAGAACTTGTCGGAGTTACTACTGTAGCAAAGGCATTATCGGTTGCGT
TAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Subunit ChlI of Mg-chelatase (ChlI)

(348-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D3VDA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.341

100

0.688
  radA Streptococcus pneumoniae Rx1

59.111

98.901

0.585
  radA Streptococcus pneumoniae D39

59.111

98.901

0.585
  radA Streptococcus pneumoniae R6

59.111

98.901

0.585
  radA Streptococcus pneumoniae TIGR4

59.111

98.901

0.585
  radA Streptococcus mitis NCTC 12261

59.111

98.901

0.585
  radA Streptococcus mitis SK321

58.889

98.901

0.582

Multiple sequence alignment