Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   UB51_RS04025 Genome accession   NZ_CP010976
Coordinates   926725..927159 (+) Length   144 a.a.
NCBI ID   WP_044879878.1    Uniprot ID   A0A0D3VGE1
Organism   Paenibacillus sp. IHBB 10380     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 921725..932159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UB51_RS04000 (UB51_04000) - 921790..922605 (+) 816 WP_044876183.1 DUF2935 domain-containing protein -
  UB51_RS26840 - 922736..922912 (-) 177 WP_082063028.1 YjfB family protein -
  UB51_RS04010 (UB51_04010) ung 923343..924011 (+) 669 WP_044876184.1 uracil-DNA glycosylase -
  UB51_RS04015 (UB51_04015) - 924044..924454 (+) 411 WP_044876185.1 hypothetical protein -
  UB51_RS04020 (UB51_04020) - 924574..925965 (+) 1392 WP_052675749.1 hypothetical protein -
  UB51_RS04025 (UB51_04025) nucA/comI 926725..927159 (+) 435 WP_044879878.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  UB51_RS04030 (UB51_04030) - 927377..928021 (-) 645 WP_044876186.1 hypothetical protein -
  UB51_RS04035 (UB51_04035) - 928366..928671 (+) 306 Protein_800 class I SAM-dependent methyltransferase -
  UB51_RS04040 (UB51_04040) - 929470..930030 (+) 561 WP_052675750.1 hypothetical protein -
  UB51_RS04045 (UB51_04045) - 931185..931856 (+) 672 WP_044876187.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15759.64 Da        Isoelectric Point: 4.8056

>NTDB_id=141018 UB51_RS04025 WP_044879878.1 926725..927159(+) (nucA/comI) [Paenibacillus sp. IHBB 10380]
MKKTLSSFIIAAIVAAVAYYLNLDVSLKSVPVHQSTESDYTLVFPGDRYPETATHIQKAIEAGHSAICTIDRSGAEENRN
ESLKGIATKKGYDRDEWPMAMCAEGGAGADIEYISPKDNRGAGSWVGHQLENYVEGARVEFIFE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=141018 UB51_RS04025 WP_044879878.1 926725..927159(+) (nucA/comI) [Paenibacillus sp. IHBB 10380]
TTGAAAAAGACGCTATCAAGCTTTATTATTGCTGCCATTGTGGCTGCCGTAGCCTACTATTTGAATTTGGATGTGTCGCT
TAAGTCTGTTCCTGTTCATCAAAGCACGGAGTCTGATTATACTTTGGTGTTCCCAGGTGATCGATATCCAGAGACTGCAA
CTCATATACAGAAGGCTATAGAAGCAGGGCATTCTGCGATATGTACGATTGATCGATCTGGGGCAGAAGAGAATCGTAAT
GAATCTTTAAAGGGGATAGCAACCAAAAAAGGCTATGATCGTGATGAGTGGCCTATGGCCATGTGTGCAGAAGGTGGAGC
AGGCGCAGATATAGAGTACATAAGCCCTAAGGATAATAGAGGTGCAGGATCTTGGGTTGGACATCAGCTTGAGAATTATG
TGGAGGGTGCAAGAGTGGAATTTATATTTGAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D3VGE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.766

77.083

0.507

Multiple sequence alignment