Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CFTSP3_RS05785 Genome accession   NZ_CP010953
Coordinates   1167368..1167742 (-) Length   124 a.a.
NCBI ID   WP_023385389.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. testudinum Sp3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1162368..1172742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFTSP3_RS05760 (CFTSP3_1158) tatB 1163035..1163490 (+) 456 WP_058909382.1 Sec-independent protein translocase protein TatB -
  CFTSP3_RS05765 (CFTSP3_1159) tatC 1163490..1164245 (+) 756 WP_058909383.1 twin-arginine translocase subunit TatC -
  CFTSP3_RS05770 (CFTSP3_1160) queA 1164242..1165261 (+) 1020 WP_023385384.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CFTSP3_RS05775 (CFTSP3_1161) - 1165272..1166522 (+) 1251 WP_039362567.1 hypothetical protein -
  CFTSP3_RS05780 (CFTSP3_1162) - 1166497..1167360 (-) 864 WP_058909384.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CFTSP3_RS05785 (CFTSP3_1163) dprB 1167368..1167742 (-) 375 WP_023385389.1 Holliday junction resolvase RuvX Machinery gene
  CFTSP3_RS05790 (CFTSP3_1164) dprA 1167739..1168506 (-) 768 WP_039362573.1 DNA-processing protein DprA Machinery gene
  CFTSP3_RS05795 (CFTSP3_1165) - 1168490..1169653 (-) 1164 WP_023385393.1 divergent polysaccharide deacetylase family protein -
  CFTSP3_RS05800 (CFTSP3_1166) ilvC 1169654..1170676 (-) 1023 WP_023385395.1 ketol-acid reductoisomerase -
  CFTSP3_RS05805 (CFTSP3_1167) - 1170823..1171635 (+) 813 WP_058909385.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13650.08 Da        Isoelectric Point: 8.4775

>NTDB_id=140869 CFTSP3_RS05785 WP_023385389.1 1167368..1167742(-) (dprB) [Campylobacter fetus subsp. testudinum Sp3]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DAEIIYVDEAYSSCEASELSKDSKDGKFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=140869 CFTSP3_RS05785 WP_023385389.1 1167368..1167742(-) (dprB) [Campylobacter fetus subsp. testudinum Sp3]
TTGATAGTAGCTATCGATGTTGGACTAAAAAGAATAGGAGTTGCGGTTGCTGTTTTGCCGACTGTTGTGCTTCCTAGTGA
GCCTATTTTACGTAAAAATCGCAATCAAGCAGCAAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCAACAAAACTAG
TAGTTGGTTTGCCAAAAGGCGGTAGCTGCGAAGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTGGTGGGTTTT
GATGCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGTGAATTATCCAAAGATTCTAAAGATGGCAA
ATTTGATAGTATCGCTGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

49.612

100

0.516

Multiple sequence alignment