Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   UC35_RS10990 Genome accession   NZ_CP010951
Coordinates   2276060..2277436 (+) Length   458 a.a.
NCBI ID   WP_061499285.1    Uniprot ID   A0A127JTQ8
Organism   Ramlibacter tataouinensis strain 5-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2271060..2282436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC35_RS10960 (UC35_10970) - 2271349..2271753 (-) 405 WP_061499272.1 5-carboxymethyl-2-hydroxymuconate Delta-isomerase -
  UC35_RS10965 (UC35_10975) hpaD 2271764..2272690 (-) 927 WP_061499276.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  UC35_RS10970 (UC35_10980) hpaE 2272692..2274149 (-) 1458 WP_061503792.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  UC35_RS10975 (UC35_10985) - 2274179..2274925 (-) 747 WP_061499279.1 fumarylacetoacetate hydrolase family protein -
  UC35_RS10980 (UC35_10990) - 2274922..2275542 (-) 621 WP_061499281.1 fumarylacetoacetate hydrolase family protein -
  UC35_RS10985 (UC35_10995) hpaR 2275539..2275973 (-) 435 WP_061499283.1 homoprotocatechuate degradation operon regulator HpaR -
  UC35_RS10990 (UC35_11000) radA 2276060..2277436 (+) 1377 WP_061499285.1 DNA repair protein RadA Machinery gene
  UC35_RS10995 (UC35_11005) - 2277495..2277905 (+) 411 WP_061499288.1 hypothetical protein -
  UC35_RS11000 (UC35_11010) - 2277951..2278886 (+) 936 WP_061499292.1 branched-chain amino acid transaminase -
  UC35_RS11005 (UC35_11015) - 2278892..2279107 (+) 216 WP_061499294.1 zinc-finger domain-containing protein -
  UC35_RS11010 (UC35_11020) waaF 2279133..2280122 (+) 990 WP_061499298.1 lipopolysaccharide heptosyltransferase II -
  UC35_RS11015 (UC35_11025) - 2280397..2281584 (-) 1188 WP_061499300.1 ATP-binding protein -
  UC35_RS11020 (UC35_11030) - 2281612..2282322 (-) 711 WP_061499303.1 response regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48106.44 Da        Isoelectric Point: 7.1660

>NTDB_id=140856 UC35_RS10990 WP_061499285.1 2276060..2277436(+) (radA) [Ramlibacter tataouinensis strain 5-10]
MAKEKTVYTCSECGGASPRWLGKCPHCEAWNTLIETVPQAAAGTRNRFAALAKTAEVAVLADIEASEEERTPTGIGELDR
VLGGGIVEGGVVLIGGDPGIGKSTLLLQALDGLQRAQVPTLYVTGEESGAQVALRSRRLGLDSSQVKVLAEIQLEKILAT
LSAARPAVAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKASGTAVVLVGHVTKEGALAGPRVLEHMVDTVLYFEG
DTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDSGGPSP
RRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRIGEPAADLSVMLAITSSLRGKPLPRGFIAFGEVGLAGEV
RPAPRGQERLREAAKLGFSVAVVPKANAPKKGSREIEGLTIHAVDRIEEAMEVVRALQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=140856 UC35_RS10990 WP_061499285.1 2276060..2277436(+) (radA) [Ramlibacter tataouinensis strain 5-10]
ATGGCCAAGGAAAAAACCGTCTACACCTGCTCCGAATGCGGCGGCGCCAGCCCGCGCTGGCTGGGCAAATGCCCGCACTG
CGAGGCCTGGAACACGCTGATCGAGACCGTGCCACAAGCGGCCGCCGGCACCAGGAACCGGTTCGCGGCCCTGGCGAAGA
CGGCCGAGGTGGCGGTGCTGGCCGACATCGAGGCGAGCGAGGAAGAGCGCACGCCCACCGGCATCGGCGAGCTCGACCGC
GTGCTGGGCGGCGGCATCGTCGAAGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGACGCTGCTGCT
GCAGGCGCTGGACGGCCTGCAGCGCGCGCAGGTGCCCACGCTCTACGTGACCGGCGAGGAAAGCGGCGCGCAGGTGGCAC
TGCGCTCGCGCCGACTCGGCCTCGACAGCTCGCAGGTCAAGGTGCTGGCCGAAATCCAGCTGGAAAAGATCCTGGCCACC
CTGAGCGCGGCGCGGCCGGCGGTGGCGGTGATCGACTCGATCCAGACCGTGTACTCGGACCAGCTCACCTCGGCGCCCGG
CTCGGTGGCGCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGGCCAGCGGCACGGCGGTGGTGCTGGTGG
GCCATGTGACCAAGGAGGGGGCGCTGGCCGGTCCGCGCGTGCTGGAACACATGGTGGACACGGTGCTCTACTTCGAGGGC
GACACGCACTCGAGCTTCCGGCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTGTTCGCCAT
GACCGAGAAGGGCCTCAAGGGCGTGGCCAACCCCAGCGCCATCTTCCTGTCGCAGCACAGCGAGCCGGTGCCCGGCAGCT
GCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAGATCCAGGCGCTGGTGGACTCGGGCGGGCCCAGCCCG
CGGCGCCTGTCCGTCGGCCTGGACCGCGACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGCCGGCGTGGCCTG
CATGGACCAGGACGTGTTCGTCAACGCGGTCGGCGGCGTGCGCATCGGCGAGCCGGCGGCCGACCTGTCGGTGATGCTGG
CGATCACCTCCAGCCTGCGCGGCAAGCCGCTGCCGCGCGGCTTCATCGCCTTCGGCGAGGTCGGGCTGGCGGGTGAAGTG
CGGCCGGCGCCGCGCGGCCAGGAGCGGCTGCGCGAGGCCGCCAAGCTCGGCTTTTCGGTGGCGGTGGTGCCCAAGGCCAA
CGCGCCCAAGAAGGGCAGCCGCGAGATCGAAGGCCTGACGATCCACGCGGTCGACCGCATCGAAGAGGCGATGGAAGTGG
TGCGGGCGCTGCAATGA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(72-147)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127JTQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

99.127

0.48
  radA Streptococcus pneumoniae Rx1

47.307

93.231

0.441
  radA Streptococcus pneumoniae D39

47.307

93.231

0.441
  radA Streptococcus pneumoniae R6

47.307

93.231

0.441
  radA Streptococcus pneumoniae TIGR4

47.307

93.231

0.441
  radA Streptococcus mitis SK321

47.307

93.231

0.441
  radA Streptococcus mitis NCTC 12261

47.073

93.231

0.439

Multiple sequence alignment