Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   UC35_RS07875 Genome accession   NZ_CP010951
Coordinates   1635489..1635881 (-) Length   130 a.a.
NCBI ID   WP_061497807.1    Uniprot ID   -
Organism   Ramlibacter tataouinensis strain 5-10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1630489..1640881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC35_RS07860 (UC35_07870) - 1632288..1634369 (-) 2082 WP_415752703.1 methyl-accepting chemotaxis protein -
  UC35_RS07865 (UC35_07875) - 1634575..1635105 (-) 531 WP_061497803.1 chemotaxis protein CheW -
  UC35_RS07870 (UC35_07880) - 1635124..1635489 (-) 366 WP_061497805.1 response regulator transcription factor -
  UC35_RS07875 (UC35_07885) pilG 1635489..1635881 (-) 393 WP_061497807.1 response regulator Regulator
  UC35_RS22970 - 1635953..1636126 (-) 174 WP_082792933.1 rubredoxin -
  UC35_RS07880 (UC35_07890) thiD 1636221..1637156 (+) 936 WP_061497809.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  UC35_RS07885 (UC35_07895) hemL 1637195..1638496 (+) 1302 WP_061497811.1 glutamate-1-semialdehyde 2,1-aminomutase -
  UC35_RS07890 (UC35_07900) purH 1638631..1640202 (-) 1572 WP_061497813.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  UC35_RS07895 (UC35_07905) - 1640238..1640477 (-) 240 WP_061497815.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14338.49 Da        Isoelectric Point: 6.9491

>NTDB_id=140850 UC35_RS07875 WP_061497807.1 1635489..1635881(-) (pilG) [Ramlibacter tataouinensis strain 5-10]
MSTTGFKVLVIDDSNTIRRSAEIFLKQGGHDVLLAEDGFDALAKVNDYQPNLIFCDILMPRLDGYQTCAIIKRNAKFASV
PVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQTVQQFGAANEGAM

Nucleotide


Download         Length: 393 bp        

>NTDB_id=140850 UC35_RS07875 WP_061497807.1 1635489..1635881(-) (pilG) [Ramlibacter tataouinensis strain 5-10]
GTGAGCACAACTGGGTTCAAGGTGCTGGTGATCGATGACAGCAACACGATCCGCCGCAGCGCCGAGATCTTCCTGAAGCA
GGGCGGTCATGACGTGCTCCTGGCCGAGGACGGGTTCGACGCGCTGGCCAAGGTCAATGACTACCAGCCCAACCTGATCT
TCTGCGACATCCTCATGCCCCGGCTGGACGGCTACCAGACGTGCGCCATCATCAAGCGCAACGCCAAGTTCGCATCCGTG
CCCGTGGTGATGCTGTCCTCCAAGGACGGCGTCTTCGACAAGGCCCGCGGCCGCATGGTCGGTTCGCAGGACTACCTGAC
CAAACCGTTTACCAAGGACCAACTGCTCCAGACGGTGCAGCAGTTCGGTGCCGCGAATGAAGGAGCGATGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.759

89.231

0.515

Multiple sequence alignment