Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   UC78_RS03300 Genome accession   NZ_CP010906
Coordinates   639669..640106 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni strain 35925     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634669..645106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC78_RS03280 (UC78_0654) kdpD 635157..637088 (+) 1932 WP_002856839.1 sensor histidine kinase -
  UC78_RS03285 (UC78_0655) uvrB 637083..639056 (-) 1974 WP_044305931.1 excinuclease ABC subunit UvrB -
  UC78_RS03290 (UC78_0656) - 639210..639440 (+) 231 WP_002852327.1 hypothetical protein -
  UC78_RS03295 (UC78_0657) - 639430..639672 (+) 243 WP_002854947.1 hypothetical protein -
  UC78_RS03300 (UC78_0658) Cj0683 639669..640106 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  UC78_RS03305 (UC78_0659) priA 640088..641941 (+) 1854 WP_079005308.1 primosomal protein N' -
  UC78_RS03310 cipA 641951..643346 (-) 1396 Protein_637 DUF2972 domain-containing protein -
  UC78_RS03315 (UC78_0662) ispG 643492..644565 (+) 1074 WP_044305932.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=140755 UC78_RS03300 WP_002852324.1 639669..640106(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain 35925]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=140755 UC78_RS03300 WP_002852324.1 639669..640106(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain 35925]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment