Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   UC34_RS10935 Genome accession   NZ_CP010897
Coordinates   2414045..2415418 (+) Length   457 a.a.
NCBI ID   WP_044455568.1    Uniprot ID   -
Organism   Pandoraea vervacti strain NS15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2409045..2420418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC34_RS10920 (UC34_10945) thiD 2410484..2411320 (-) 837 WP_044455565.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  UC34_RS10925 (UC34_10950) lplT 2411322..2412614 (-) 1293 WP_044455566.1 lysophospholipid transporter LplT -
  UC34_RS10930 (UC34_10955) alr 2412952..2414022 (+) 1071 WP_044458011.1 alanine racemase -
  UC34_RS10935 (UC34_10960) radA 2414045..2415418 (+) 1374 WP_044455568.1 DNA repair protein RadA Machinery gene
  UC34_RS10940 (UC34_10965) - 2415593..2417533 (-) 1941 WP_044458012.1 ATP-binding cassette domain-containing protein -
  UC34_RS10945 (UC34_10970) - 2417645..2418304 (-) 660 WP_157123144.1 hypothetical protein -
  UC34_RS10950 (UC34_10975) cls 2418448..2419875 (-) 1428 WP_044455571.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48163.36 Da        Isoelectric Point: 6.9985

>NTDB_id=140717 UC34_RS10935 WP_044455568.1 2414045..2415418(+) (radA) [Pandoraea vervacti strain NS15]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAETSTGHRYQALAKSTPVRKLAEIEASDVPRFSSGVGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRTAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=140717 UC34_RS10935 WP_044455568.1 2414045..2415418(+) (radA) [Pandoraea vervacti strain NS15]
ATGGCTAAAGCCAAGACCGTCTATATCTGTACCGAGTGTGGCGGGCAGACGCCCAAGTGGGCGGGACAATGCCCGAACTG
CAACGGGTGGAATACGCTCGTCGAGTCTGTTGCGGAGACGTCCACGGGGCATCGCTATCAGGCGTTGGCCAAGAGCACGC
CAGTGCGCAAGCTCGCCGAGATCGAGGCGTCTGACGTGCCGCGTTTTTCCAGCGGGGTCGGCGAGTTCGATCGTGTCCTG
GGCGGTGGTCTCGTGGCGGGCGGCGTGGTGCTGATCGGGGGCGATCCCGGTATCGGCAAATCGACGCTGCTGCTCCAGTC
GCTCGCCCATCTGGCGCGTGAGCGGCGAGCGCTGTACGTCAGTGGCGAAGAGTCGGGCGCACAGATTGCCTTGCGCGCGC
AGCGGCTCGGGCTTGGCGCGGCGGGCGAGGGCGGCGGCGAGCTGGACCTGCTCGCCGAAATTCAGCTGGAAAAAATTCTC
GGCGCCATCGAATCGGAGAAACCGGATGTCGTGGTCATCGACTCGATTCAGACGATCTATTCCGAGGCGCTGACGTCGGC
CCCCGGATCGGTGGCGCAGGTACGCGAGTGTGCCGCGCAGTTGACGCGCACGGCCAAGCAAAGCGGTGTCACCGTCATCA
TGGTCGGTCATGTGACGAAGGAGGGTAGCCTCGCCGGGCCGCGCGTGCTCGAACATATCGTCGATACGGTCTTGTACTTC
GAGGGGGACACGCATTCGTCGTATCGTCTCGTTCGGGCGTTCAAGAATCGCTTTGGGGCCGTGAACGAGCTGGGCGTGTT
CGCCATGACGGAGAAGGGACTGCGGGGGGTGGCCAATCCGTCTGCACTGTTCCTCTCGCAGCATGAGCAAAGTGTGCCGG
GTTCCTGCGTGCTGGTCACACAGGAGGGCACGCGTCCGTTGCTCGTCGAGGTGCAGGCGCTGGTCGATACGGCGCAGGTG
CCGAACCCCCGGCGCCTTGCCGTTGGGTTGGAGCAGAACCGTCTGGCGATGTTGCTTGCCGTGATGCATCGGCACGCGGG
CATCGCCTGCTTCGATCAGGACGTGTTTCTGAACGCCGTTGGCGGTGTCAAGATCACCGAACCTGCAGCCGATCTGGCGG
TGTTGCTGGCGATTCACTCGTCGCTGCGAAACAAGCCTTTGCCGCGCGGCATCGTGGCGTTCGGCGAGGTGGGGCTGGCG
GGCGAAATCCGGCCGAGTCCGCGCGGTCAGGATCGCCTCAAGGAAGCCGCCAAACTTGGCTTCTCGATTGCGATCATTCC
GAAAGCGAATGCGCCGAAACAGCCGATCGACGGACTGGAGGTGCATGCCGTCGACCGTCTTGAGCAAGCGATTTCCGTGG
TCGCGGGGTTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(79-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.142

100

0.501
  radA Streptococcus pneumoniae Rx1

48.485

93.873

0.455
  radA Streptococcus pneumoniae D39

48.485

93.873

0.455
  radA Streptococcus pneumoniae R6

48.485

93.873

0.455
  radA Streptococcus pneumoniae TIGR4

48.485

93.873

0.455
  radA Streptococcus mitis SK321

48.485

93.873

0.455
  radA Streptococcus mitis NCTC 12261

48.485

93.873

0.455

Multiple sequence alignment