Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   UC34_RS02865 Genome accession   NZ_CP010897
Coordinates   629424..630911 (-) Length   495 a.a.
NCBI ID   WP_044453809.1    Uniprot ID   -
Organism   Pandoraea vervacti strain NS15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624424..635911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC34_RS02840 (UC34_02905) rapZ 625594..626466 (-) 873 WP_044453798.1 RNase adapter RapZ -
  UC34_RS02845 (UC34_02910) - 626649..626978 (-) 330 WP_044453800.1 PsiF family protein -
  UC34_RS02850 (UC34_02915) hprK 627160..628125 (-) 966 WP_044453802.1 HPr(Ser) kinase/phosphatase -
  UC34_RS02855 (UC34_02920) ptsN 628234..628743 (-) 510 WP_044453804.1 PTS IIA-like nitrogen regulatory protein PtsN -
  UC34_RS02860 (UC34_02925) hpf 628926..629282 (-) 357 WP_044453807.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  UC34_RS02865 (UC34_02930) rpoN/rpoN1 629424..630911 (-) 1488 WP_044453809.1 RNA polymerase factor sigma-54 Machinery gene
  UC34_RS02870 (UC34_02935) lptB 631006..631761 (-) 756 WP_157123303.1 LPS export ABC transporter ATP-binding protein -
  UC34_RS02875 (UC34_02940) lptA 631802..632494 (-) 693 WP_044453813.1 lipopolysaccharide transport periplasmic protein LptA -
  UC34_RS02880 (UC34_02945) lptC 632491..633195 (-) 705 WP_072617429.1 LPS export ABC transporter periplasmic protein LptC -
  UC34_RS02885 (UC34_02950) - 633220..633774 (-) 555 WP_044453815.1 KdsC family phosphatase -
  UC34_RS02890 (UC34_02955) - 633786..634766 (-) 981 WP_044453817.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55210.10 Da        Isoelectric Point: 5.1872

>NTDB_id=140710 UC34_RS02865 WP_044453809.1 629424..630911(-) (rpoN/rpoN1) [Pandoraea vervacti strain NS15]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERSTSSSSSNDS
GESTNGRDEARELDGEARFDDNAQDTGGDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKASPRDRALV
EFLIESLDEDGYLGSLLDEIQAEMPEELALETEEINAALALLQSFDPAGVGARSPAECLRLQLQRLPASNVRTLSLRIVT
DHLELLAARDYTRLRRLLGVSEDALRAAHQLIRSLDPFPGAAYGSPQADYVVPDVLVRKQGTGWTAELNPEVMPRLRINE
MYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHESTI
SRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAKY
REAMRIPAVNLRKSL

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=140710 UC34_RS02865 WP_044453809.1 629424..630911(-) (rpoN/rpoN1) [Pandoraea vervacti strain NS15]
ATGAAACCCACTCTTCAACTCCGCACCTCGCAGCACCTGACCCTCACGCCTCAGTTGCAGCAATCGATCCGGTTGCTGCA
ACTGTCTACGCTCGAACTCCAACAGGAAGTCGAACACGCGCTCACCCAGAACCCGATGCTCGAACGCGAGGACGATTGGC
TCGCTGGCTCGGTTCGGGTCGGCACCGACGGGTCGCTGCGCAACGAACGGAGCACGTCGTCCAGCAGTTCGAACGATAGC
GGCGAGTCGACCAACGGCCGCGACGAGGCCCGCGAACTCGATGGCGAAGCCCGCTTCGACGACAACGCCCAGGACACCGG
CGGCGACTGGAGCCTGAACGACTTCGCCCGCTCGGGCAGTGCGTCGGATGACGACGACAACGCCCGCCCCCAGTTGCACG
TCGATCACCCCAACCTGCGTGAACACCTGCTCGCGCAATTACGCCTGACCAAAGCCAGCCCGCGCGATCGTGCGCTGGTG
GAATTCCTGATCGAATCGCTCGACGAAGACGGCTACCTCGGCTCCCTGCTCGACGAGATTCAGGCGGAGATGCCTGAGGA
ACTGGCGCTGGAGACCGAAGAGATCAACGCGGCGCTCGCGTTGCTGCAAAGCTTCGACCCCGCAGGCGTGGGTGCCCGCA
GCCCGGCCGAATGCCTTCGTCTGCAACTGCAGCGTCTGCCGGCCAGCAATGTGCGCACGTTGTCGCTGCGTATCGTCACC
GATCACCTGGAATTGCTCGCCGCACGCGATTACACGCGTCTGCGCCGCCTGCTGGGGGTGAGCGAAGACGCGCTGCGTGC
CGCGCACCAGTTGATCCGCTCCCTTGACCCATTCCCGGGCGCCGCCTACGGCTCGCCGCAGGCCGACTACGTCGTGCCCG
ACGTGCTCGTACGCAAGCAGGGGACCGGCTGGACGGCCGAGCTCAATCCGGAGGTCATGCCGCGCCTGCGCATCAACGAA
ATGTATGCGCGAATCCTCCGAAACAACCGGAACGATCCGGGCACCGGCAACCTCCAACAGCAATTGCAGGAAGCCCGCTG
GCTGATCAAGAACATTCAGCAGCGCTTCGACACGATCCTGCGGGTCGCGCAGGCGATTGTCGAGCGTCAAAAGAACTTCT
TCACGCATGGTGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGTTTACATGAATCCACGATT
TCACGGGTGACGACGAGTAAGTACATGCTCACTCCATTTGGAACCTTCGAGCTCAAGTACTTCTTCGGATCGCACGTGGC
AACGGAAGCCGGAGGCGCTGCGTCATCGACCGCTATCCGCGCACTCATCAAGCAACTCATAGGAGCAGAAGACCCGCAGA
GCCCCCTTTCCGATAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGTTTTGTGGTGGCGCGGCGAACGGTCGCGAAGTAC
CGCGAGGCCATGCGAATCCCCGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-493)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(133-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.263

100

0.691

Multiple sequence alignment