Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ASZ86_RS01295 Genome accession   NZ_CP013319
Coordinates   258994..259467 (-) Length   157 a.a.
NCBI ID   WP_001915017.1    Uniprot ID   -
Organism   Vibrio cholerae strain NCTC9420     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 253994..264467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ86_RS01265 (ASZ86_00243) - 256339..256566 (-) 228 WP_071919646.1 hypothetical protein -
  ASZ86_RS01270 (ASZ86_00244) - 256614..256982 (-) 369 WP_071919647.1 hypothetical protein -
  ASZ86_RS01275 (ASZ86_00245) - 257013..257747 (-) 735 WP_071919648.1 WYL domain-containing protein -
  ASZ86_RS20735 (ASZ86_00246) - 257886..258062 (-) 177 WP_071919649.1 hypothetical protein -
  ASZ86_RS01285 (ASZ86_00247) - 258066..258509 (-) 444 WP_071919650.1 DUF2787 domain-containing protein -
  ASZ86_RS01290 (ASZ86_00248) - 258560..258997 (-) 438 WP_055035457.1 DUF2787 domain-containing protein -
  ASZ86_RS01295 (ASZ86_00249) radC 258994..259467 (-) 474 WP_001915017.1 RadC family protein Machinery gene
  ASZ86_RS21265 - 259654..259875 (+) 222 WP_071919651.1 ribbon-helix-helix protein, CopG family -
  ASZ86_RS01305 (ASZ86_00250) - 259866..260984 (+) 1119 WP_055035456.1 DNA cytosine methyltransferase -
  ASZ86_RS01310 (ASZ86_00251) - 261037..262695 (+) 1659 WP_055035455.1 McrB family protein -
  ASZ86_RS01315 (ASZ86_00252) - 262682..263980 (+) 1299 WP_071919652.1 LlaJI family restriction endonuclease -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17724.95 Da        Isoelectric Point: 5.6192

>NTDB_id=140691 ASZ86_RS01295 WP_001915017.1 258994..259467(-) (radC) [Vibrio cholerae strain NCTC9420]
MNPKTSDYQKQQRYQENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGSHEREVFALLLLDNQNRLIEFKELFQGT
VDAASVYPREVVKAVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDALALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=140691 ASZ86_RS01295 WP_001915017.1 258994..259467(-) (radC) [Vibrio cholerae strain NCTC9420]
ATGAACCCCAAAACTTCCGATTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCGGCTGAGATACT
GGCTACGCGCTACGTGCGTGGTGACGCCCTAACCAACCCTGATGCCACTAAAGAGTATGTGCGCTGTAAGCTAGGCAGCC
ATGAGCGTGAAGTGTTTGCCTTATTGCTACTAGATAACCAAAACCGTCTGATTGAGTTTAAAGAGCTGTTTCAAGGAACG
GTGGACGCGGCCAGCGTCTACCCACGTGAAGTAGTGAAAGCGGTGTTAGAAGTCAATGCCGCAGCGGTGATATTTGCCCA
TAACCATCCATCCGGTGACTCAACGCCGTCTCAAGCCGATAGACGCATAACCGAAAGACTCAAAGATGCTTTAGCGCTGG
TGGATGTTCGCGTTCTCGACCATATCGTGACAGGCGATACCTGCACCTCATTTGCTGAAAGGGGGTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.985

87.261

0.401