Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TO66_RS27230 Genome accession   NZ_CP010892
Coordinates   5988168..5989535 (-) Length   455 a.a.
NCBI ID   WP_044465181.1    Uniprot ID   -
Organism   Pseudomonas sp. MRSN 12121 strain MRSN12121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5983168..5994535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO66_RS27205 (TO66_27195) yjiA 5983409..5984383 (-) 975 WP_044465176.1 GTPase -
  TO66_RS27210 (TO66_27200) - 5984503..5984700 (-) 198 WP_044465177.1 YbdD/YjiX family protein -
  TO66_RS27215 (TO66_27205) - 5984715..5986781 (-) 2067 WP_044465178.1 carbon starvation CstA family protein -
  TO66_RS27220 (TO66_27210) - 5987020..5987388 (+) 369 WP_044465179.1 PilZ domain-containing protein -
  TO66_RS27225 (TO66_27215) - 5987405..5988145 (-) 741 WP_044465180.1 hypothetical protein -
  TO66_RS27230 (TO66_27220) radA 5988168..5989535 (-) 1368 WP_044465181.1 DNA repair protein RadA Machinery gene
  TO66_RS27235 (TO66_27225) - 5989581..5990129 (-) 549 WP_044465182.1 ankyrin repeat domain-containing protein -
  TO66_RS27240 (TO66_27230) katB 5990308..5991849 (-) 1542 WP_044465183.1 catalase KatB -
  TO66_RS27245 (TO66_27235) mscL 5992137..5992550 (+) 414 WP_044465184.1 large-conductance mechanosensitive channel protein MscL -
  TO66_RS27250 (TO66_27240) - 5992600..5993376 (-) 777 WP_044465185.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48854.33 Da        Isoelectric Point: 7.1317

>NTDB_id=140677 TO66_RS27230 WP_044465181.1 5988168..5989535(-) (radA) [Pseudomonas sp. MRSN 12121 strain MRSN12121]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLSMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVNRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=140677 TO66_RS27230 WP_044465181.1 5988168..5989535(-) (radA) [Pseudomonas sp. MRSN 12121 strain MRSN12121]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCTGGCCAGTGCGGTGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCCGCGGCTCCCAGCGGTCGCACCGGCTGGGCGG
GCCAGCAGGCGCAGATCAAGACTCTGGCCGAGGTCAGCGTCGAAGAGATTCCGCGCTTTTCCACCGCTTCCGGCGAGTTG
GACCGGGTGCTTGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCGGGGATCGGCAAGTCGACCAT
CCTGTTGCAGACCTTGTGCAACATCGCCACCCGCATGCCGGCGCTCTACGTCACCGGCGAGGAATCGCAGCAACAGGTGG
CGATGCGCGCCCGCCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAGACCATCATCGCC
ACGGCCCGGCTGGAGAAGCCCAAGGTCATGGTGATCGACTCCATCCAGACCATCTTTACCGAGCAACTGCAATCGGCCCC
GGGCGGCGTCTCGCAAGTGCGTGAGAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGTGGCACGGCGATCTTCCTGG
TAGGCCACGTGACCAAGGAGGGGGCGCTGGCCGGGCCGCGCGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGATCGCGGCCTGAAGGAAGTTTCCAACCCTTCGGCGATTTTCCTTACCCGCGCCCAGGAAGAGGTGCCGGGCA
GTGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGACGACAGCCATCTGGCC
AATCCGCGGCGGGTCACCCTGGGCCTGGACCAGAATCGCCTGTCGATGCTGTTGGCCGTCCTGCACCGCCATGGCGGCAT
CCCGACTCACGACCAGGATGTGTTTCTCAACGTGGTCGGTGGGGTCAAGGTGCTGGAAACCGCATCCGACCTGGCCTTGA
TGGCGGCGGTAATGTCCAGCCTGCGCAACCGGCCCTTGCCCCATGACCTGTTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAGGTGCGTCCGGTGCCAAGTGGCCAGGAGCGTCTCAAGGAAGCGGCCAAGCATGGCTTCAAGCGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCGCAGGGCCTGCGGATCATTGCGGTAAACCGTCTGGAACAGGCGCTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459

Multiple sequence alignment