Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | vpachn25_RS14055 | Genome accession | NZ_CP010883 |
| Coordinates | 3060138..3060716 (-) | Length | 192 a.a. |
| NCBI ID | WP_015297396.1 | Uniprot ID | A0A243VIJ8 |
| Organism | Vibrio parahaemolyticus strain CHN25 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3055138..3065716
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| vpachn25_RS14030 (VpaChn25_2672) | aroB | 3055428..3056528 (-) | 1101 | WP_005496576.1 | 3-dehydroquinate synthase | - |
| vpachn25_RS14035 (VpaChn25_2673) | aroK | 3056560..3057078 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| vpachn25_RS14040 (VpaChn25_2674) | pilQ | 3057267..3059015 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| vpachn25_RS14045 (VpaChn25_2675) | pilP | 3059047..3059562 (-) | 516 | WP_005454781.1 | pilus assembly protein PilP | Machinery gene |
| vpachn25_RS14050 (VpaChn25_2676) | pilO | 3059552..3060145 (-) | 594 | WP_005496571.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| vpachn25_RS14055 (VpaChn25_2677) | pilN | 3060138..3060716 (-) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| vpachn25_RS14060 (VpaChn25_2678) | pilM | 3060700..3061716 (-) | 1017 | WP_017449463.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| vpachn25_RS14065 (VpaChn25_2679) | - | 3061859..3064429 (+) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| vpachn25_RS14070 (VpaChn25_2680) | oxyR | 3064485..3065393 (-) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.95 Da Isoelectric Point: 6.9944
>NTDB_id=140584 vpachn25_RS14055 WP_015297396.1 3060138..3060716(-) (pilN) [Vibrio parahaemolyticus strain CHN25]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=140584 vpachn25_RS14055 WP_015297396.1 3060138..3060716(-) (pilN) [Vibrio parahaemolyticus strain CHN25]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAACATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAGGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATTTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAACATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAGGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATTTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |