Detailed information NTG0140575

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: vpachn25_RS12970
• Genome accession: NZ_CP010883
• Coordinates: 2844797..2845786 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain CHN25
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2839797..2850786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
vpachn25_RS12955 (VpaChn25_2484)	recA	2840345..2841388 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
vpachn25_RS12960 (VpaChn25_2485)	pncC	2841589..2842071 (-)	483	WP_065870916.1	nicotinamide-nucleotide amidase	-
vpachn25_RS12965 (VpaChn25_2486)	mutS	2842156..2844717 (+)	2562	WP_065870917.1	DNA mismatch repair protein MutS	-
vpachn25_RS12970 (VpaChn25_2487)	rpoS	2844797..2845786 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
vpachn25_RS12975 (VpaChn25_2488)	-	2845867..2846790 (-)	924	WP_065870918.1	peptidoglycan DD-metalloendopeptidase family protein	-
vpachn25_RS12980 (VpaChn25_2489)	-	2846805..2847431 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
vpachn25_RS12985 (VpaChn25_2490)	surE	2847431..2848207 (-)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
vpachn25_RS12990 (VpaChn25_2491)	truD	2848207..2849250 (-)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
vpachn25_RS12995 (VpaChn25_2492)	ispF	2849297..2849773 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
vpachn25_RS13000 (VpaChn25_2493)	ispD	2849791..2850495 (-)	705	WP_024702351.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
vpachn25_RS13005 (VpaChn25_2494)	ftsB	2850497..2850778 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=140575 vpachn25_RS12970 WP_005478537.1 2844797..2845786(-) (rpoS) [Vibrio parahaemolyticus strain CHN25]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=140575 vpachn25_RS12970 WP_005478537.1 2844797..2845786(-) (rpoS) [Vibrio parahaemolyticus strain CHN25]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATATGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCTTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851