Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   vpachn25_RS12840 Genome accession   NZ_CP010883
Coordinates   2822680..2823198 (-) Length   172 a.a.
NCBI ID   WP_065870910.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain CHN25     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2817680..2828198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vpachn25_RS12815 (VpaChn25_2466) rimM 2817789..2818337 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  vpachn25_RS12820 (VpaChn25_2467) rpsP 2818366..2818614 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  vpachn25_RS12825 (VpaChn25_2468) ffh 2818824..2820206 (-) 1383 WP_005462555.1 signal recognition particle protein -
  vpachn25_RS12830 (VpaChn25_2469) - 2820419..2821213 (+) 795 WP_005462565.1 cytochrome C assembly family protein -
  vpachn25_RS12835 (VpaChn25_2470) - 2821339..2822619 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  vpachn25_RS12840 (VpaChn25_2471) luxS 2822680..2823198 (-) 519 WP_065870910.1 S-ribosylhomocysteine lyase Regulator
  vpachn25_RS12845 (VpaChn25_2472) - 2823265..2823870 (-) 606 WP_015297256.1 hypothetical protein -
  vpachn25_RS12850 (VpaChn25_2473) gshA 2823895..2825463 (-) 1569 WP_065870911.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19019.71 Da        Isoelectric Point: 4.7134

>NTDB_id=140572 vpachn25_RS12840 WP_065870910.1 2822680..2823198(-) (luxS) [Vibrio parahaemolyticus strain CHN25]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGSPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=140572 vpachn25_RS12840 WP_065870910.1 2822680..2823198(-) (luxS) [Vibrio parahaemolyticus strain CHN25]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTTCGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment