Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   vpachn25_RS06905 Genome accession   NZ_CP010883
Coordinates   1510108..1511529 (-) Length   473 a.a.
NCBI ID   WP_021449193.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain CHN25     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1505108..1516529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vpachn25_RS06880 (VpaChn25_1302) - 1505672..1506322 (+) 651 WP_005480776.1 thiopurine S-methyltransferase -
  vpachn25_RS06885 (VpaChn25_1303) purT 1506424..1507599 (-) 1176 WP_029825906.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  vpachn25_RS06890 (VpaChn25_1304) cdd 1507747..1508634 (-) 888 WP_015296604.1 cytidine deaminase -
  vpachn25_RS06895 (VpaChn25_1305) - 1508999..1509676 (-) 678 WP_024701131.1 LrgB family protein -
  vpachn25_RS06900 (VpaChn25_1306) - 1509678..1510052 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  vpachn25_RS06905 (VpaChn25_1307) sbcB 1510108..1511529 (-) 1422 WP_021449193.1 exodeoxyribonuclease I Machinery gene
  vpachn25_RS06910 (VpaChn25_1308) - 1511685..1513058 (-) 1374 WP_025818214.1 L-cystine transporter -
  vpachn25_RS06915 (VpaChn25_1309) - 1513251..1513946 (-) 696 WP_025818215.1 NAD(P)H-binding protein -
  vpachn25_RS06920 (VpaChn25_1311) cobT 1514630..1515673 (+) 1044 WP_021453099.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  vpachn25_RS06925 (VpaChn25_1312) - 1515718..1516470 (+) 753 WP_031792000.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54645.97 Da        Isoelectric Point: 4.9813

>NTDB_id=140564 vpachn25_RS06905 WP_021449193.1 1510108..1511529(-) (sbcB) [Vibrio parahaemolyticus strain CHN25]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=140564 vpachn25_RS06905 WP_021449193.1 1510108..1511529(-) (sbcB) [Vibrio parahaemolyticus strain CHN25]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAGGGTCTATCCGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAGCCAAAAACCACCAGCCTAGGCTATAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCACCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCTCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCGCCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment