Detailed information NTG0140554

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: vpachn25_RS01385
• Genome accession: NZ_CP010883
• Coordinates: 297812..298819 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain CHN25
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 292812..303819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
vpachn25_RS01355 (VpaChn25_0238)	zapB	292981..293223 (+)	243	WP_005481417.1	cell division protein ZapB	-
vpachn25_RS01360 (VpaChn25_0239)	rraA	293328..293840 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
vpachn25_RS01365 (VpaChn25_0240)	-	293917..294834 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
vpachn25_RS01370 (VpaChn25_0241)	hslU	295019..296350 (-)	1332	WP_021449544.1	HslU--HslV peptidase ATPase subunit	-
vpachn25_RS01375 (VpaChn25_0242)	hslV	296374..296925 (-)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
vpachn25_RS01380 (VpaChn25_0243)	ftsN	297090..297635 (-)	546	WP_005481405.1	cell division protein FtsN	-
vpachn25_RS01385 (VpaChn25_0244)	cytR	297812..298819 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
vpachn25_RS01390 (VpaChn25_0245)	priA	299152..301356 (-)	2205	WP_025515133.1	primosomal protein N'	-
vpachn25_RS01395 (VpaChn25_0246)	rpmE	301651..301872 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
vpachn25_RS01400 (VpaChn25_0247)	rpsJ	302330..302641 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
vpachn25_RS01405 (VpaChn25_0248)	rplC	302656..303285 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=140554 vpachn25_RS01385 WP_005481416.1 297812..298819(-) (cytR) [Vibrio parahaemolyticus strain CHN25]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=140554 vpachn25_RS01385 WP_005481416.1 297812..298819(-) (cytR) [Vibrio parahaemolyticus strain CHN25]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904