Detailed information NTG0140488

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: CUGBS98_RS00970
• Genome accession: NZ_CP010875
• Coordinates: 167806..168219 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain CU_GBS_98
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 162806..173219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CUGBS98_RS00950 (CUGBS98_00192)	-	165059..165424 (+)	366	WP_000285373.1	DUF1033 family protein	-
CUGBS98_RS00955 (CUGBS98_00193)	comYA	165597..166568 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
CUGBS98_RS00960 (CUGBS98_00194)	comYB	166462..167505 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
CUGBS98_RS00965 (CUGBS98_00195)	comGC/cglC	167502..167831 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
CUGBS98_RS00970 (CUGBS98_00196)	comYD	167806..168219 (+)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
CUGBS98_RS00975 (CUGBS98_00197)	comGE	168191..168490 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
CUGBS98_RS00980 (CUGBS98_00198)	comGF	168444..168905 (+)	462	WP_001874812.1	competence type IV pilus minor pilin ComGF	-
CUGBS98_RS00985 (CUGBS98_00199)	comGG	168883..169254 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
CUGBS98_RS00990 (CUGBS98_00200)	comYH	169369..170343 (+)	975	WP_001008574.1	N-6 DNA methylase	Machinery gene
CUGBS98_RS00995 (CUGBS98_00201)	-	170375..171568 (+)	1194	WP_000047534.1	acetate kinase	-
CUGBS98_RS01000 (CUGBS98_00202)	-	171720..171926 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
CUGBS98_RS10960	-	171985..172122 (+)	138	WP_001865900.1	hypothetical protein	-
CUGBS98_RS01005 (CUGBS98_00203)	-	172163..172618 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=140488 CUGBS98_RS00970 WP_000244261.1 167806..168219(+) (comYD) [Streptococcus agalactiae strain CU_GBS_98]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=140488 CUGBS98_RS00970 WP_000244261.1 167806..168219(+) (comYD) [Streptococcus agalactiae strain CU_GBS_98]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394