Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ASZ84_RS10980 Genome accession   NZ_CP013307
Coordinates   2383005..2383523 (-) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   Q9KNU9
Organism   Vibrio cholerae strain E506     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2378005..2388523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ84_RS10965 (ASZ84_02167) aroB 2379440..2380525 (-) 1086 WP_000439805.1 3-dehydroquinate synthase -
  ASZ84_RS10970 (ASZ84_02168) aroK 2380553..2381077 (-) 525 WP_000818616.1 shikimate kinase AroK -
  ASZ84_RS10975 (ASZ84_02169) pilQ 2381264..2382979 (-) 1716 WP_000788426.1 type IV pilus secretin PilQ Machinery gene
  ASZ84_RS10980 (ASZ84_02170) pilP 2383005..2383523 (-) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  ASZ84_RS10985 (ASZ84_02171) pilO 2383513..2384103 (-) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  ASZ84_RS10990 (ASZ84_02172) pilN 2384096..2384680 (-) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  ASZ84_RS10995 (ASZ84_02173) pilM 2384670..2385149 (-) 480 Protein_2069 type IV pilus assembly protein PilM -
  ASZ84_RS11000 (ASZ84_02174) - 2385418..2386155 (-) 738 WP_000005494.1 LexA family transcriptional regulator -
  ASZ84_RS11005 (ASZ84_02175) - 2386308..2386532 (+) 225 WP_000373567.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=140248 ASZ84_RS10980 WP_000792032.1 2383005..2383523(-) (pilP) [Vibrio cholerae strain E506]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=140248 ASZ84_RS10980 WP_000792032.1 2383005..2383523(-) (pilP) [Vibrio cholerae strain E506]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KNU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564