Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HR49_RS08945 Genome accession   NZ_CP010820
Coordinates   1820329..1822020 (+) Length   563 a.a.
NCBI ID   WP_036126925.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain RB-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1815329..1827020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR49_RS08920 (HR49_08935) xseB 1815745..1815978 (+) 234 WP_036126931.1 exodeoxyribonuclease VII small subunit -
  HR49_RS08925 (HR49_08940) - 1815982..1816863 (+) 882 WP_025116086.1 polyprenyl synthetase family protein -
  HR49_RS08930 (HR49_08945) dxs 1817026..1818927 (+) 1902 WP_036126930.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HR49_RS08935 (HR49_08950) - 1818927..1819745 (+) 819 WP_036126928.1 TlyA family RNA methyltransferase -
  HR49_RS08940 (HR49_08955) ahrC 1819846..1820295 (+) 450 WP_008179906.1 transcriptional regulator AhrC/ArgR -
  HR49_RS08945 (HR49_08960) recN 1820329..1822020 (+) 1692 WP_036126925.1 DNA repair protein RecN Machinery gene
  HR49_RS08950 (HR49_08965) - 1822142..1823089 (+) 948 WP_008179909.1 SpoIVB peptidase S55 domain-containing protein -
  HR49_RS08955 (HR49_08970) spo0A 1823484..1824275 (+) 792 WP_008179911.1 sporulation transcription factor Spo0A -
  HR49_RS08960 (HR49_08975) - 1824452..1824637 (+) 186 WP_036126923.1 hypothetical protein -
  HR49_RS08965 (HR49_08980) - 1824971..1826542 (+) 1572 WP_008179917.1 DUF342 domain-containing protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63600.41 Da        Isoelectric Point: 4.6273

>NTDB_id=140068 HR49_RS08945 WP_036126925.1 1820329..1822020(+) (recN) [Lysinibacillus fusiformis strain RB-21]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISNSTHPVLKK
LEEAGIEIEEDTVILRRDLNDSGKSICRVNGKLVPLSVLREIGGSLIDIHGQHENQELMDEKQHINLLDQFAEEQLLPKQ
KIYSEQYEEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELEEANLRLGEEDELLDERRRLMNYNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALDDAVTVDEQFKEASEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEDILAYFEKIKIELNELLNRDEILQVKERRVLEMESVLNELATELSTVRKDAAQQLSEAIMAELRELHMEKAKFIVNFE
ELPYFDATGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
VSINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQKARIEEVSRMMSGTEITALTLQHATELLTMAEERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=140068 HR49_RS08945 WP_036126925.1 1820329..1822020(+) (recN) [Lysinibacillus fusiformis strain RB-21]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCTATCATTGAGGATTTGACTGTGAGTTTTTCTGAAGGATTGACTGTACT
GACTGGGGAAACTGGTGCTGGTAAATCTATTATCATTGATGCTGTTCATTTACTTGCTGGTGGACGGGGAAATACTGAAT
TTATTCGTCATGGGGCAAGAAAGGCTGAATTAGGTGGCTTATTTCAAATTTCGAATTCCACGCATCCTGTGCTGAAAAAA
TTAGAAGAAGCAGGCATTGAAATTGAAGAAGATACAGTTATTTTACGTCGTGATCTAAATGATTCTGGGAAAAGTATTTG
CCGTGTAAATGGTAAACTTGTGCCATTATCCGTACTGAGAGAAATTGGTGGGAGTCTCATTGATATTCATGGCCAACATG
AAAACCAAGAGCTGATGGATGAAAAACAGCATATCAATTTACTCGACCAGTTTGCAGAAGAGCAGCTGCTGCCTAAACAA
AAAATATACAGCGAACAATATGAAGAATATCGATTGCTGAAAAAGGACTTAGCCTCGATTTCCATCGATGAACAATTGAT
GGCACAACGCATTGATTTGTATCAATTCCAAATAAAAGAGCTAGAAGAAGCCAATTTAAGGCTAGGTGAGGAAGATGAAC
TTCTTGATGAACGCCGTCGTCTCATGAATTACAATAAAATTTTTGAACGTTCTAGTGCTGCCTATGAGGCCATTCAGGGA
GAATCAAAAGGTCTTGATTGGATTGGTAATGCAATGGGTGCCTTGGACGATGCAGTAACAGTGGACGAGCAATTCAAAGA
AGCTTCTGAGGCAGTGACAACGGCATTTTATGCGCTACAAGATGCGGCTTATCAGGTCAAAAATGTATTAGATGAATTGG
AGTTTGATCCAGCGCGTTTAAATGAGGTAGAACAACGATTAGCACTATTCCAAAATTTAAAACGCAAATATGGCTCGACT
GTGGAGGACATTTTAGCGTATTTTGAAAAAATAAAAATAGAGTTAAATGAGCTGCTGAATCGCGATGAAATTTTGCAGGT
GAAAGAACGAAGAGTGCTCGAAATGGAATCGGTGCTCAATGAGCTTGCTACAGAACTTTCAACTGTGCGTAAAGATGCTG
CCCAACAGTTAAGTGAAGCCATTATGGCAGAGTTACGGGAATTACATATGGAAAAAGCTAAATTTATTGTCAATTTTGAA
GAATTACCATATTTCGATGCAACTGGAAAAGATCAAATTATTTTTTATATTTCTACCAATGTTGGAGAACCGCCAAAATC
CTTACCGAAAATTGCCTCGGGAGGAGAATTATCACGAATGATGCTGGCGCTGAAAACCATTTTCTCTTCTTCTAATGGTA
TCACATCCATCATTTTTGATGAAGTAGACACAGGAGTTAGTGGAAGAGTGGCACAAGCCATTGCAGAAAAAATTGCAGCG
GTATCCATTAATTCTCAAGTGCTATGTATTTCACATTTACCTCAAGTTGCTGCGATGGCTGATCATCATTACTTCATTAA
GAAAGAAGTTGAGCATGATCGAACATTTACGTCTTTATCAGAAATTGATCAAAAGGCTCGAATTGAAGAAGTCAGCCGTA
TGATGTCTGGAACTGAAATTACAGCTTTAACGCTTCAGCATGCAACGGAGTTATTAACAATGGCAGAAGAGCGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.86

100

0.542

Multiple sequence alignment