Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HR49_RS02365 Genome accession   NZ_CP010820
Coordinates   475623..476573 (+) Length   316 a.a.
NCBI ID   WP_036121145.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain RB-21     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470623..481573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR49_RS02345 (HR49_02345) - 471148..472293 (+) 1146 WP_036121158.1 M20 peptidase aminoacylase family protein -
  HR49_RS02350 (HR49_02350) - 472293..473117 (+) 825 WP_036121156.1 GNAT family N-acetyltransferase -
  HR49_RS02355 (HR49_02355) menC 473139..474245 (+) 1107 WP_036121152.1 o-succinylbenzoate synthase -
  HR49_RS02360 (HR49_02360) - 474285..475337 (+) 1053 WP_036121147.1 membrane protein -
  HR49_RS02365 (HR49_02365) ceuB 475623..476573 (+) 951 WP_036121145.1 ABC transporter permease Machinery gene
  HR49_RS02370 (HR49_02370) - 476566..477519 (+) 954 WP_008175176.1 iron chelate uptake ABC transporter family permease subunit -
  HR49_RS02375 (HR49_02375) - 477516..478277 (+) 762 WP_008175175.1 ABC transporter ATP-binding protein -
  HR49_RS02380 (HR49_02380) - 478344..479363 (+) 1020 WP_008175172.1 siderophore ABC transporter substrate-binding protein -
  HR49_RS02385 (HR49_02385) - 479365..479679 (+) 315 WP_008175171.1 antibiotic biosynthesis monooxygenase family protein -
  HR49_RS02390 (HR49_02390) - 479783..480322 (-) 540 WP_036121143.1 hypothetical protein -
  HR49_RS02395 (HR49_02395) - 480661..481563 (+) 903 WP_144422565.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34731.91 Da        Isoelectric Point: 10.1462

>NTDB_id=140059 HR49_RS02365 WP_036121145.1 475623..476573(+) (ceuB) [Lysinibacillus fusiformis strain RB-21]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFSNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMYGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYISVPVLILAYIYANRFTVAGMGEDFAKNLGLSYKLVVNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLVMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=140059 HR49_RS02365 WP_036121145.1 475623..476573(+) (ceuB) [Lysinibacillus fusiformis strain RB-21]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATAGTATCGCTATTTATCGGAGTAGTAGATATTAAACC
AAGTGATCTATTAGACTTCCAATCAGAAGAAACTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCTATTTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTATCACCAACGACAGCA
GGTACTTTAGATGCCACTCGACTGGGTGTATTGATTTCCATGATGTTTTTCTCGAATGTCACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTATTTATGCAAATATTAAATCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTATGGTAATATCCTGTCTTCCGTAACAACGTTCTTTGCTTATAAGGCAAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTATGAACTGTTATACATAAGTGTACC
AGTACTTATTTTAGCTTATATTTATGCCAATCGTTTTACAGTAGCTGGTATGGGTGAGGATTTTGCTAAAAATCTTGGTC
TATCCTATAAGCTTGTGGTGAATTTAGGCTTAGTATTGGTGGCTCTTATCTCCACAACAGTGGTGCTAACAGTCGGTGTC
ATTCCGTTCCTTGGCTTGATCATACCGAATATTATTTCACTGTTTAAAGGTGATAATTTGGCAAAAACATTGCCGCATAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGCGATATTTTAGGACGCGTACTGATTTTCCCTTATGAGATACCAATTA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTAGTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522

Multiple sequence alignment