Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MPR_RS00735 Genome accession   NZ_CP010817
Coordinates   165873..167243 (+) Length   456 a.a.
NCBI ID   WP_006257778.1    Uniprot ID   A0AAC9ISS3
Organism   Myroides profundi strain D25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 160873..172243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPR_RS00715 (MPR_0144) glmS 161243..163087 (+) 1845 WP_041888359.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  MPR_RS00720 (MPR_0145) atpD 163241..164752 (+) 1512 WP_006257781.1 F0F1 ATP synthase subunit beta -
  MPR_RS00725 (MPR_0146) - 164779..165060 (+) 282 WP_006257780.1 hypothetical protein -
  MPR_RS00730 (MPR_0147) - 165122..165682 (-) 561 WP_041888362.1 hypothetical protein -
  MPR_RS00735 (MPR_0148) radA 165873..167243 (+) 1371 WP_006257778.1 DNA repair protein RadA Machinery gene
  MPR_RS00740 (MPR_0149) - 167260..168900 (+) 1641 WP_041888364.1 DUF4139 domain-containing protein -
  MPR_RS00745 (MPR_0150) - 168972..169391 (-) 420 WP_041888366.1 hypothetical protein -
  MPR_RS00750 (MPR_0151) - 169420..169851 (-) 432 WP_041888368.1 hypothetical protein -
  MPR_RS00755 (MPR_0152) - 169999..170505 (+) 507 WP_041888370.1 YetF domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50226.73 Da        Isoelectric Point: 6.2746

>NTDB_id=140041 MPR_RS00735 WP_006257778.1 165873..167243(+) (radA) [Myroides profundi strain D25]
MAKVKTAFFCQSCGTQYAKWQGQCNACKEWNTLVEEVIQKEEKTAWKAVSSSPNTMKKVAKPLKVREIDSTEEIRMNTMD
GELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQISLRLPFKTLYVSGEESQKQIKMRAERINPANDNCYILTETNTQNIF
RQIEEIQPDVLIIDSIQTLHTEYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKMLEHMVDTVLQF
EGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILISHKEEELSGTAIAATLEGMRPLMVEVQALVSTAVY
GTPQRSATGYNLKRLNMILAVLEKRAGFRLGQKDVFLNITGGITVDDPAIDLGVVAAILSSDQDMSIGKDFTFAGEVGLS
GEIRPVNRVDQRIQEAEKLGFSTIFVSKYNKISHTGRGIKVVLVTKIEDVVEYLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=140041 MPR_RS00735 WP_006257778.1 165873..167243(+) (radA) [Myroides profundi strain D25]
ATGGCAAAGGTAAAGACGGCTTTTTTCTGTCAGAGTTGTGGTACACAATACGCTAAATGGCAAGGACAATGTAATGCTTG
TAAAGAGTGGAATACACTTGTAGAAGAGGTAATCCAAAAAGAAGAAAAGACAGCGTGGAAAGCAGTAAGTAGTTCTCCTA
ATACCATGAAGAAGGTAGCGAAGCCTCTAAAGGTACGTGAGATAGACAGTACAGAGGAAATACGTATGAATACTATGGAT
GGTGAGCTTAATCGTGTTTTAGGAGGTGGACTGGTTCCTGGTTCTATGGTGCTTTTAGGAGGTGAGCCTGGAATAGGAAA
AAGTACATTATTATTACAGATATCTCTGCGTTTGCCTTTTAAGACTCTTTATGTATCAGGAGAGGAAAGTCAGAAACAGA
TAAAGATGAGGGCAGAGCGTATTAATCCTGCTAATGACAACTGTTATATTCTTACTGAGACTAATACACAGAACATCTTT
CGTCAAATAGAGGAGATACAGCCTGATGTATTAATCATTGACTCTATTCAAACTTTGCATACAGAATATATTGAATCTTC
TGCAGGGACTGTATCTCAGATCAAAGAGTGTACAGCTGAGCTAACCAAATTCGCTAAAGAAACAGGAACTCCGGTGTTGA
TCATTGGACATATAACAAAGGATGGAAGTATAGCTGGTCCTAAAATGCTTGAGCACATGGTGGATACTGTACTACAGTTC
GAAGGAGATAGAAATCACGTGTATCGAATACTAAGAGCAAATAAGAACCGTTTTGGTTCTACAGCAGAACTTGGTATTTA
TGAGATGCAAGGAAGTGGTCTTAGAGAGGTGTCTAACCCTTCTGAAATACTTATATCACATAAGGAAGAAGAATTGTCAG
GAACAGCCATCGCTGCTACTTTAGAAGGTATGCGCCCACTTATGGTAGAGGTACAGGCCCTTGTGAGTACAGCTGTATAT
GGTACTCCACAACGTAGTGCAACAGGATATAATCTGAAACGACTGAATATGATCTTAGCTGTATTAGAAAAAAGAGCTGG
ATTTAGATTAGGACAAAAAGACGTTTTCTTAAATATCACAGGAGGTATTACAGTGGATGATCCTGCTATTGACTTAGGAG
TGGTTGCTGCTATTCTATCTTCAGATCAAGATATGTCTATTGGCAAAGACTTTACATTCGCTGGAGAGGTAGGACTATCT
GGTGAGATTAGACCTGTAAATAGAGTAGACCAACGTATACAAGAAGCAGAGAAGCTAGGTTTCTCTACTATTTTTGTTTC
AAAATATAATAAGATTAGTCATACTGGTAGAGGAATTAAGGTTGTTCTAGTGACTAAGATTGAAGATGTAGTAGAATACC
TCTTCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(336-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.348

100

0.498
  radA Streptococcus pneumoniae Rx1

49.455

100

0.498
  radA Streptococcus pneumoniae D39

49.455

100

0.498
  radA Streptococcus pneumoniae R6

49.455

100

0.498
  radA Streptococcus pneumoniae TIGR4

49.455

100

0.498
  radA Streptococcus mitis NCTC 12261

49.455

100

0.498
  radA Streptococcus mitis SK321

49.455

100

0.498

Multiple sequence alignment