Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VAB027_RS20600 Genome accession   NZ_CP010812
Coordinates   182726..183586 (-) Length   286 a.a.
NCBI ID   WP_080341942.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177726..188586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS00885 (VAB027_168) gspL 177984..179195 (+) 1212 WP_002044748.1 type II secretion system protein GspL -
  VAB027_RS00890 (VAB027_169) - 179205..179702 (+) 498 WP_000661347.1 type II secretion system protein M -
  VAB027_RS00895 (VAB027_170) - 179704..180462 (+) 759 WP_046125991.1 type II secretion system protein N -
  VAB027_RS00900 (VAB027_171) cysQ 180514..181341 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VAB027_RS00905 (VAB027_172) nudE 181364..181912 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  VAB027_RS00910 (VAB027_173) nfuA 182051..182638 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  VAB027_RS20600 comF 182726..183586 (-) 861 WP_080341942.1 ComF family protein Machinery gene
  VAB027_RS00920 (VAB027_175) bioH 183522..184283 (+) 762 WP_046125992.1 pimeloyl-ACP methyl ester esterase BioH -
  VAB027_RS00925 (VAB027_176) - 184528..184998 (+) 471 WP_000961393.1 hypothetical protein -
  VAB027_RS00930 (VAB027_177) - 185093..187414 (-) 2322 WP_046125993.1 Tex family protein -
  VAB027_RS00935 (VAB027_178) greB 187659..188141 (+) 483 WP_000850492.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32512.46 Da        Isoelectric Point: 8.0588

>NTDB_id=140016 VAB027_RS20600 WP_080341942.1 182726..183586(-) (comF) [Vibrio cholerae strain 10432-62]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=140016 VAB027_RS20600 WP_080341942.1 182726..183586(-) (comF) [Vibrio cholerae strain 10432-62]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
CTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTACTCACCCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCGCGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.951

100

0.99
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment