Detailed information NTG0140007

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VAB027_RS16710
• Genome accession: NZ_CP010812
• Coordinates: 3612569..3613576 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116739.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 10432-62
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3607569..3618576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VAB027_RS16700 (VAB027_3312)	cysM	3608742..3609629 (+)	888	WP_001279365.1	cysteine synthase CysM	-
VAB027_RS16705 (VAB027_3313)	mutS	3609897..3612475 (+)	2579	Protein_3224	DNA mismatch repair protein MutS	-
VAB027_RS16710 (VAB027_3315)	rpoS	3612569..3613576 (-)	1008	WP_000116739.1	RNA polymerase sigma factor RpoS	Regulator
VAB027_RS16715 (VAB027_3316)	nlpD	3613650..3614585 (-)	936	WP_000177561.1	murein hydrolase activator NlpD	-
VAB027_RS16720 (VAB027_3317)	-	3614585..3615211 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VAB027_RS16725 (VAB027_3318)	surE	3615204..3615956 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
VAB027_RS16730 (VAB027_3319)	truD	3615958..3617043 (-)	1086	WP_001961440.1	tRNA pseudouridine(13) synthase TruD	-
VAB027_RS16735 (VAB027_3320)	ispF	3617073..3617549 (-)	477	WP_001961441.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VAB027_RS16740 (VAB027_3321)	ispD	3617546..3618244 (-)	699	WP_001961442.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VAB027_RS16745 (VAB027_3322)	ftsB	3618241..3618525 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=140007 VAB027_RS16710 WP_000116739.1 3612569..3613576(-) (rpoS) [Vibrio cholerae strain 10432-62]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=140007 VAB027_RS16710 WP_000116739.1 3612569..3613576(-) (rpoS) [Vibrio cholerae strain 10432-62]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994