Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VAB027_RS16570 Genome accession   NZ_CP010812
Coordinates   3586093..3586611 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3581093..3591611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS16545 (VAB027_3280) rimM 3581202..3581756 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  VAB027_RS16550 (VAB027_3281) rpsP 3581784..3582032 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  VAB027_RS16555 (VAB027_3282) ffh 3582268..3583653 (-) 1386 WP_002043108.1 signal recognition particle protein -
  VAB027_RS16560 (VAB027_3284) - 3583866..3584660 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  VAB027_RS16565 (VAB027_3285) - 3584743..3586023 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  VAB027_RS16570 (VAB027_3286) luxS 3586093..3586611 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  VAB027_RS16575 (VAB027_3287) gshA 3586660..3588234 (-) 1575 WP_046127123.1 glutamate--cysteine ligase -
  VAB027_RS16580 (VAB027_3288) - 3588346..3591201 (-) 2856 WP_046127124.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=140005 VAB027_RS16570 WP_001130227.1 3586093..3586611(-) (luxS) [Vibrio cholerae strain 10432-62]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=140005 VAB027_RS16570 WP_001130227.1 3586093..3586611(-) (luxS) [Vibrio cholerae strain 10432-62]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCTCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment