Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   VAB027_RS13720 Genome accession   NZ_CP010812
Coordinates   2959662..2962886 (-) Length   1074 a.a.
NCBI ID   WP_235290697.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2954662..2967886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS13700 (VAB027_2712) - 2955475..2955903 (+) 429 WP_000929906.1 HIT domain-containing protein -
  VAB027_RS13705 (VAB027_2713) - 2956159..2956389 (-) 231 WP_046126944.1 FeoC-like transcriptional regulator -
  VAB027_RS13710 (VAB027_2714) feoB 2956386..2958662 (-) 2277 WP_046126945.1 Fe(2+) transporter permease subunit FeoB -
  VAB027_RS13715 (VAB027_2715) - 2958659..2958889 (-) 231 WP_000777870.1 ferrous iron transport protein A -
  VAB027_RS13720 (VAB027_2716) tfoS 2959662..2962886 (-) 3225 WP_235290697.1 AraC family transcriptional regulator Regulator
  VAB027_RS13725 (VAB027_2717) znuA 2963209..2964093 (-) 885 WP_000952850.1 zinc ABC transporter substrate-binding protein ZnuA -
  VAB027_RS13730 (VAB027_2718) znuC 2964177..2964965 (+) 789 WP_000996145.1 zinc ABC transporter ATP-binding protein ZnuC -
  VAB027_RS13735 (VAB027_2719) znuB 2964958..2965740 (+) 783 WP_000571528.1 zinc ABC transporter permease subunit ZnuB -
  VAB027_RS13740 (VAB027_2720) sucD 2965827..2966699 (-) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  VAB027_RS13745 (VAB027_2721) sucC 2966699..2967865 (-) 1167 WP_001048578.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 121873.42 Da        Isoelectric Point: 6.7225

>NTDB_id=139999 VAB027_RS13720 WP_235290697.1 2959662..2962886(-) (tfoS) [Vibrio cholerae strain 10432-62]
MVAQNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLPQLSSHIVYANSAFWAFEQHELFRTYPGGERELMLSLTPGT
QIIQMGASNGMIWMVDGENFYSYEIRSGRVESLSLHELYQLNSASKVVINDAQFLVSKWALATNVGVYLSDEQGFAHVKN
SGKHFIQKLYFSHKRRELLVGSKRGALVIDIENKRPPLDRIGSSHVLSIAETEKEYWIGTEDGLFVYSFITGKIVQLESN
NQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLYN
FNFSDELRKHLIYPGKVNDFVIAQEHLWIATEKGLVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWS
YSPSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIVIGTEHGAYSLLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGSY
GVFQWRKDQPEAVTVELIEENIQPLCIAESKQGMWLISTKGISYYRNQELTKHFGAPYGLISNEFLSASCAVGEEQDTSS
LIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKLLGYRMSEPLKIAYGDSISFQFGALPSSRSQSLEYKLNDEQ
QWQRFDWALLNFDQLLPGKYRLKVRSANPTQRYRTEALFDFEVLQPWYMTSIALVGYVLSVLGLLALALWWRTRMILAAN
RKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILGNVLDNIDASLRHLSSYAKVRAWSEFEAPFNKVKQELAQLH
FMHRGDEDESKYHDLHLLIESALKSWQEEYSKALIKLTYSGEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEV
RNAQAVIVFSDFGAPIQNIDKTMVTLSGSSYPLEELVTRSGGVLHVLALKERNVIELAWPLVTLPELETIHKPEEGEQAA
KVGIDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQRRFKAATGKTFKESLNEVRLEKACQSLLSGAKIAQ
VAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=139999 VAB027_RS13720 WP_235290697.1 2959662..2962886(-) (tfoS) [Vibrio cholerae strain 10432-62]
ATTGTTGCGCAAAATCTCTACCTCGGTAGTGATGGGGGGATTTGGGTACATGATGTTCATGGCAAAGTGATGTACTTTGA
TGGACAAAACGTTTTGCCTCGTCGTGGTTCTGTTCTGCCGCAGTTGTCCAGTCATATTGTTTATGCGAACAGTGCATTTT
GGGCTTTTGAGCAACACGAGTTGTTCAGAACCTATCCCGGGGGAGAAAGAGAGCTGATGTTGAGCTTAACTCCGGGAACG
CAGATTATTCAGATGGGTGCCTCAAATGGCATGATCTGGATGGTCGATGGGGAAAACTTCTATAGTTATGAGATCCGAAG
TGGCCGCGTCGAATCCCTCTCGTTACATGAACTTTATCAGCTCAATAGTGCCAGCAAGGTCGTGATTAACGATGCGCAGT
TTTTAGTCTCGAAATGGGCTTTAGCGACTAATGTTGGGGTGTATTTATCTGATGAACAAGGTTTTGCCCATGTCAAAAAC
TCTGGCAAGCACTTTATCCAAAAGCTCTATTTTTCCCATAAGCGGCGAGAGCTGTTAGTTGGGTCTAAACGTGGCGCGTT
AGTCATTGATATTGAAAATAAACGTCCACCACTGGATAGAATTGGTTCCTCCCATGTCCTGTCTATTGCGGAAACCGAGA
AAGAGTACTGGATCGGTACAGAAGATGGGCTCTTTGTGTACTCTTTTATCACCGGGAAAATCGTACAACTTGAGAGTAAC
AACCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACGCCATGGTGAATGATTTTCAAGGTGGGATGTGGATAGGAAC
TGACAAGGGGATTTTTTATTACTCCCTATTTGGTCAGCAGTTTACTCGGTATCCGGCGCAAGCATTATCTAACGACGGAA
GTAAAACACCGATCGGTAAAATAGCCGCTCTTAACTCGGATGGAGACTATTTGGCGATAACCGCACAAGGCCTGTATAAC
TTCAATTTTTCAGATGAGCTACGTAAGCATCTTATCTATCCAGGTAAAGTAAATGATTTTGTGATTGCCCAAGAGCATCT
CTGGATCGCGACAGAGAAAGGTCTGGTTCGTTACAATCTCAGTCGTCGTAGTATTGATACGCCCAATTTACCGCTCCCTT
TGCTACAAACGGCTATTCAGCATCTGAGCTTAGATAGTGACGGTAACTTATGGGGGACCAGTGATTACCAAATATGGTCA
TACTCACCCTCTGAAAAAAATTATCGAGATTATGGTTCTGAATGGATGGTGAAGGCTTTTTCTCCATCAAGGATCACTCT
GCTTGCCGCAGTAAAAGACGGCATAGTGATTGGGACAGAACATGGCGCTTATTCCCTGCTTGAAAAACAGATCCGCTTTG
ATTTTTCGAGTCATCGTTATGGTGAGATTTTGCAAGTTGCTGAAGATTCTTCAGGCCACATTTGGCTTGTTGGCTCTTAT
GGGGTCTTTCAGTGGCGTAAAGATCAGCCCGAAGCCGTCACTGTCGAGTTAATTGAAGAGAATATACAACCTTTGTGTAT
TGCTGAGTCTAAGCAGGGGATGTGGCTTATCTCCACCAAAGGGATCAGTTATTACCGTAATCAAGAGCTCACTAAGCATT
TTGGGGCTCCTTATGGACTGATCAGTAATGAGTTCTTGTCTGCATCGTGTGCGGTGGGTGAGGAGCAAGATACCTCATCG
TTGATCATAGGATCGCAATTTGGTGTAGTGAAAACCAATACAGAAGAATTAGCGGTATCTAATTTACCCAATATTCAGGT
GACGTTTAGCCAAGTCAGCGTAAATCATACGACCAAGCTTTTGGGGTATCGTATGTCCGAGCCACTGAAAATTGCTTATG
GTGATTCGATCAGCTTTCAGTTTGGCGCTTTACCCTCTTCACGCAGCCAATCTTTAGAATACAAACTCAACGATGAACAG
CAGTGGCAGCGCTTTGATTGGGCGCTGCTCAATTTTGATCAACTTTTACCTGGTAAGTATCGTTTGAAAGTCCGTAGCGC
TAATCCGACACAGCGATACCGAACTGAGGCCCTGTTTGATTTTGAAGTCTTACAGCCTTGGTATATGACCTCCATCGCGC
TTGTCGGATATGTGCTGAGCGTGTTGGGGCTATTAGCACTCGCTTTATGGTGGCGAACAAGAATGATATTGGCAGCTAAC
CGCAAACTCAAAGCGCAAGTGGAGCTCAAAACCAGTCAGTTACGTCATCAAAGTAAAATTGTACTGAGCAACAACCACCA
ACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGTAACGTGTTAGACAATATTGATGCTTCATTGCGGCACTTAT
CTTCCTACGCCAAAGTACGAGCATGGAGTGAATTTGAAGCACCGTTCAACAAGGTGAAGCAAGAGTTGGCTCAACTGCAT
TTTATGCATCGCGGCGATGAGGATGAAAGCAAATATCATGATTTGCATCTTTTGATTGAGTCTGCATTGAAGAGTTGGCA
GGAAGAGTACAGTAAAGCCTTGATTAAGCTAACTTACAGCGGTGAGCCTCGCTTTGTGGAAGTCCGACAATTCAACCTTG
ATGTGTTATTTAATGCTGTATTAACGGATGCGATCAAACGTTTGTATAAGCATCAAGAATTAACCATACAACTTGAAGTG
AGAAATGCGCAGGCGGTTATCGTGTTTTCTGATTTTGGTGCCCCAATCCAAAACATAGACAAAACCATGGTGACGTTATC
TGGTAGTAGTTATCCGCTTGAAGAGTTAGTCACTCGTAGTGGTGGTGTATTGCATGTGCTCGCATTGAAAGAGCGTAATG
TGATTGAGTTAGCTTGGCCATTGGTAACCTTACCCGAGTTAGAAACCATTCATAAACCAGAGGAAGGGGAACAGGCGGCT
AAGGTTGGGATCGATGAGGTGGAGAAAGAGTGGCTAAGCAAAGTCGAGAAACTGATTGAGCTGCATTATAGCGACCCCAA
TTTCACCACATCCACTGCAGCGCAGGCGCTTTATGTCTCTGAACGAAGTTTACAGCGTCGCTTTAAAGCCGCGACAGGAA
AAACCTTCAAAGAGTCGTTAAATGAGGTTCGCTTAGAAAAAGCGTGTCAAAGCTTATTGAGTGGGGCGAAAATCGCACAA
GTTGCCTTTGATTGCGGATTTAATGATCCCTCTTATTTCAGTCAGCGTTTCAAACATCATTTTGGATTATCACCAAGCCA
ATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(994-1069)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

99.534

100

0.995

Multiple sequence alignment