Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VAB027_RS09740 Genome accession   NZ_CP010812
Coordinates   2041062..2042486 (-) Length   474 a.a.
NCBI ID   WP_046126654.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2036062..2047486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS09715 (VAB027_1908) purT 2036571..2037746 (-) 1176 WP_046126651.1 phosphoribosylglycinamide formyltransferase 2 -
  VAB027_RS09720 (VAB027_1909) - 2037900..2038775 (-) 876 WP_000462870.1 AEC family transporter -
  VAB027_RS09725 (VAB027_1910) cdd 2038934..2039821 (-) 888 WP_046126652.1 cytidine deaminase -
  VAB027_RS09730 (VAB027_1911) - 2039991..2040665 (-) 675 WP_046126653.1 LrgB family protein -
  VAB027_RS09735 (VAB027_1912) - 2040656..2041030 (-) 375 WP_046127346.1 CidA/LrgA family protein -
  VAB027_RS09740 (VAB027_1913) sbcB 2041062..2042486 (-) 1425 WP_046126654.1 exodeoxyribonuclease I Machinery gene
  VAB027_RS09745 (VAB027_1914) - 2042630..2044003 (-) 1374 WP_046126655.1 L-cystine transporter -
  VAB027_RS09750 (VAB027_1915) msrB 2044349..2044795 (+) 447 WP_046126656.1 peptide-methionine (R)-S-oxide reductase MsrB -
  VAB027_RS09755 (VAB027_1916) cobT 2045280..2046305 (+) 1026 WP_046126657.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VAB027_RS09760 (VAB027_1917) - 2046305..2047090 (+) 786 WP_046126658.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54530.94 Da        Isoelectric Point: 5.9820

>NTDB_id=139992 VAB027_RS09740 WP_046126654.1 2041062..2042486(-) (sbcB) [Vibrio cholerae strain 10432-62]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYMRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=139992 VAB027_RS09740 WP_046126654.1 2041062..2042486(-) (sbcB) [Vibrio cholerae strain 10432-62]
ATGCAGCAAGAACACCAGCCCACATTCTTTTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTGCCCGCTCCTGAAGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATATGCGGTATGAAGACCTAGCACCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTCCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989

Multiple sequence alignment