Detailed information NTG0139975

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VAB027_RS01120
• Genome accession: NZ_CP010812
• Coordinates: 235098..236105 (+)
• Length: 335 a.a.
• NCBI ID: WP_046126005.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 10432-62
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 230098..241105

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VAB027_RS01100 (VAB027_214)	metJ	230102..230419 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
VAB027_RS01105 (VAB027_215)	-	230530..231807 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
VAB027_RS01110 (VAB027_216)	rpmE	232115..232333 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
VAB027_RS01115 (VAB027_217)	priA	232588..234792 (+)	2205	WP_046126004.1	primosomal protein N'	-
VAB027_RS01120 (VAB027_218)	cytR	235098..236105 (+)	1008	WP_046126005.1	DNA-binding transcriptional regulator CytR	Regulator
VAB027_RS01125 (VAB027_219)	-	236277..236828 (+)	552	WP_001891621.1	SPOR domain-containing protein	-
VAB027_RS01130 (VAB027_220)	hslV	236965..237522 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
VAB027_RS01135 (VAB027_221)	hslU	237588..238919 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
VAB027_RS01140 (VAB027_222)	-	239023..239940 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VAB027_RS01145 (VAB027_223)	rraA	240015..240530 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37048.62 Da
• Isoelectric Point: 7.0759

>NTDB_id=139975 VAB027_RS01120 WP_046126005.1 235098..236105(+) (cytR) [Vibrio cholerae strain 10432-62]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=139975 VAB027_RS01120 WP_046126005.1 235098..236105(+) (cytR) [Vibrio cholerae strain 10432-62]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTACTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACATGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	99.701	100	0.997
cytR	Vibrio parahaemolyticus RIMD 2210633	91.018	99.701	0.907