Detailed information NTG0139962

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VAA049_RS16085
• Genome accession: NZ_CP010811
• Coordinates: 3504930..3505937 (-)
• Length: 335 a.a.
• NCBI ID: WP_033928158.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 1154-74
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3499930..3510937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VAA049_RS16075 (VAA049_3158)	cysM	3501093..3501980 (+)	888	WP_046122238.1	cysteine synthase CysM	-
VAA049_RS16080 (VAA049_3159)	mutS	3502248..3504836 (+)	2589	WP_046122442.1	DNA mismatch repair protein MutS	-
VAA049_RS16085 (VAA049_3160)	rpoS	3504930..3505937 (-)	1008	WP_033928158.1	RNA polymerase sigma factor RpoS	Regulator
VAA049_RS16090 (VAA049_3161)	nlpD	3506011..3506946 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
VAA049_RS16095 (VAA049_3162)	-	3506946..3507572 (-)	627	WP_046122239.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VAA049_RS16100 (VAA049_3163)	surE	3507565..3508317 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
VAA049_RS16105 (VAA049_3164)	truD	3508319..3509404 (-)	1086	WP_046122240.1	tRNA pseudouridine(13) synthase TruD	-
VAA049_RS16110 (VAA049_3165)	ispF	3509434..3509910 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VAA049_RS16115 (VAA049_3166)	ispD	3509907..3510605 (-)	699	WP_046122241.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VAA049_RS16120 (VAA049_3167)	ftsB	3510602..3510886 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38531.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=139962 VAA049_RS16085 WP_033928158.1 3504930..3505937(-) (rpoS) [Vibrio cholerae strain 1154-74]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGANEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=139962 VAA049_RS16085 WP_033928158.1 3504930..3505937(-) (rpoS) [Vibrio cholerae strain 1154-74]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAATGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994