Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VAA049_RS15940 Genome accession   NZ_CP010811
Coordinates   3478376..3478894 (-) Length   172 a.a.
NCBI ID   WP_046122232.1    Uniprot ID   -
Organism   Vibrio cholerae strain 1154-74     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3473376..3483894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS15915 (VAA049_3126) rimM 3473485..3474039 (-) 555 WP_046122231.1 ribosome maturation factor RimM -
  VAA049_RS15920 (VAA049_3127) rpsP 3474067..3474315 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  VAA049_RS15925 (VAA049_3128) ffh 3474551..3475936 (-) 1386 WP_000462715.1 signal recognition particle protein -
  VAA049_RS15930 (VAA049_3130) - 3476149..3476943 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  VAA049_RS15935 (VAA049_3131) - 3477026..3478306 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  VAA049_RS15940 (VAA049_3132) luxS 3478376..3478894 (-) 519 WP_046122232.1 S-ribosylhomocysteine lyase Regulator
  VAA049_RS15945 (VAA049_3133) gshA 3479141..3480712 (-) 1572 WP_046122233.1 glutamate--cysteine ligase -
  VAA049_RS15950 (VAA049_3134) - 3480824..3483679 (-) 2856 WP_046122234.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.96 Da        Isoelectric Point: 5.2199

>NTDB_id=139959 VAA049_RS15940 WP_046122232.1 3478376..3478894(-) (luxS) [Vibrio cholerae strain 1154-74]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIVAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=139959 VAA049_RS15940 WP_046122232.1 3478376..3478894(-) (luxS) [Vibrio cholerae strain 1154-74]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGTGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994

Multiple sequence alignment