Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ASZ80_RS02790 Genome accession   NZ_CP013301
Coordinates   549740..550213 (-) Length   157 a.a.
NCBI ID   WP_001068477.1    Uniprot ID   Q9KUK8
Organism   Vibrio cholerae strain C5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 544740..555213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ80_RS02750 - 545205..545429 (-) 225 WP_306461095.1 high-affinity zinc uptake system protein ZnuA precursor -
  ASZ80_RS02755 (ASZ80_00544) - 545627..546907 (+) 1281 WP_001883323.1 peptidoglycan DD-metalloendopeptidase family protein -
  ASZ80_RS02760 (ASZ80_00545) - 547085..547312 (-) 228 WP_000749780.1 hypothetical protein -
  ASZ80_RS02765 (ASZ80_00546) - 547360..547728 (-) 369 WP_000176666.1 hypothetical protein -
  ASZ80_RS02770 (ASZ80_00547) - 547759..548493 (-) 735 WP_000066839.1 WYL domain-containing protein -
  ASZ80_RS02780 (ASZ80_00549) - 548812..549255 (-) 444 WP_000041081.1 DUF2787 domain-containing protein -
  ASZ80_RS02785 (ASZ80_00550) - 549306..549743 (-) 438 WP_000572493.1 DUF2787 domain-containing protein -
  ASZ80_RS02790 (ASZ80_00551) radC 549740..550213 (-) 474 WP_001068477.1 RadC family protein Machinery gene
  ASZ80_RS21050 - 550840..551118 (+) 279 WP_001883330.1 hypothetical protein -
  ASZ80_RS02805 (ASZ80_00553) - 551539..553116 (+) 1578 WP_001230753.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17808.04 Da        Isoelectric Point: 5.2964

>NTDB_id=139952 ASZ80_RS02790 WP_001068477.1 549740..550213(-) (radC) [Vibrio cholerae strain C5]
MNPKTSEYQKQQRYQENEILEHAAEILANRYVRGDALTNPDATKEYVRCKLGSYEREVFALLLLDNQNRLIEFKELFQGT
VDAASVYPREVVKAVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDTLALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=139952 ASZ80_RS02790 WP_001068477.1 549740..550213(-) (radC) [Vibrio cholerae strain C5]
ATGAATCCCAAAACTTCCGAGTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCCGCTGAGATACT
AGCTAACCGCTACGTGCGTGGCGATGCCCTAACCAATCCTGATGCCACCAAAGAGTATGTACGCTGTAAGCTAGGCAGCT
ATGAACGTGAAGTGTTTGCCTTATTGCTACTGGATAACCAAAACCGACTGATTGAGTTTAAAGAGCTGTTTCAAGGAACG
GTGGATGCGGCCAGCGTTTACCCGCGAGAAGTGGTGAAAGCGGTGTTAGAAGTGAATGCCGCAGCAGTGATATTTGCCCA
TAACCATCCATCTGGAGACTCAACACCATCTCAAGCCGATAGACGAATAACAGAAAGACTCAAAGATACTTTAGCGCTGG
TGGATGTTCGCGTTCTCGACCATATCGTGACAGGCGATACCTGCACCTCATTTGCTGAAAGGGGGTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.255

87.261

0.395