Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VAA049_RS12765 Genome accession   NZ_CP010811
Coordinates   2782333..2783757 (+) Length   474 a.a.
NCBI ID   WP_046122048.1    Uniprot ID   -
Organism   Vibrio cholerae strain 1154-74     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2777333..2788757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS12745 (VAA049_2506) - 2777729..2778514 (-) 786 WP_046122047.1 adenosylcobinamide-GDP ribazoletransferase -
  VAA049_RS12750 (VAA049_2507) cobT 2778514..2779539 (-) 1026 WP_000887081.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VAA049_RS12755 (VAA049_2508) msrB 2780024..2780470 (-) 447 WP_000935882.1 peptide-methionine (R)-S-oxide reductase MsrB -
  VAA049_RS12760 (VAA049_2509) - 2780816..2782189 (+) 1374 WP_000117949.1 L-cystine transporter -
  VAA049_RS12765 (VAA049_2510) sbcB 2782333..2783757 (+) 1425 WP_046122048.1 exodeoxyribonuclease I Machinery gene
  VAA049_RS12770 (VAA049_2511) - 2783786..2784160 (+) 375 WP_046122432.1 CidA/LrgA family protein -
  VAA049_RS12775 (VAA049_2512) - 2784151..2784825 (+) 675 WP_000266239.1 LrgB family protein -
  VAA049_RS12780 (VAA049_2513) cdd 2784995..2785882 (+) 888 WP_001245905.1 cytidine deaminase -
  VAA049_RS12785 (VAA049_2514) - 2786041..2786916 (+) 876 WP_000462870.1 AEC family transporter -
  VAA049_RS12790 (VAA049_2515) purT 2787070..2788245 (+) 1176 WP_046122049.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54738.06 Da        Isoelectric Point: 5.8829

>NTDB_id=139951 VAA049_RS12765 WP_046122048.1 2782333..2783757(+) (sbcB) [Vibrio cholerae strain 1154-74]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNMIRQHPEIREKLVTVFSQEREFAKENNVDSQLYDGFFSPADRAAMEIIRTTSPDNLGSLEIKVADK
RIEPLLFRYRARHYPQTLTDAEQRRWAAHCRDYFERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLAH

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=139951 VAA049_RS12765 WP_046122048.1 2782333..2783757(+) (sbcB) [Vibrio cholerae strain 1154-74]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGTATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACTATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCCGCCAAGACCCTGACCGCAGAGAATGCTGAA
AAGATTGGTATTGATCGCGAGCAGTGTCTTGCTCACTTAAATATGATTCGTCAGCATCCAGAAATTCGTGAAAAGCTGGT
GACGGTATTCAGTCAAGAGCGCGAGTTTGCCAAAGAAAACAATGTGGATAGCCAATTGTATGACGGGTTCTTCTCGCCTG
CCGATCGTGCGGCGATGGAGATCATTCGCACAACATCACCAGATAATCTTGGCAGCCTAGAGATTAAAGTGGCAGATAAA
CGTATCGAACCTCTGTTGTTCCGTTACCGCGCTCGCCATTACCCACAGACCTTAACCGATGCCGAGCAGCGCCGCTGGGC
AGCGCATTGTCGTGACTATTTTGAACGTAACCTTGAAAGCTATATGCTCAATTTGGAAAACTTAGTTCATGAACATCAGA
CTGACGAAAAGAAAATGGCGATTTTAAAATCCGTTTACCATTACGTTGAAAAACTCGCTCACTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

96.195

99.789

0.96

Multiple sequence alignment