Detailed information NTG0139928

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VAA049_RS01180
• Genome accession: NZ_CP010811
• Coordinates: 247780..248787 (+)
• Length: 335 a.a.
• NCBI ID: WP_046121312.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 1154-74
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 242780..253787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VAA049_RS01160 (VAA049_222)	metJ	242784..243101 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
VAA049_RS01165 (VAA049_223)	-	243212..244489 (-)	1278	WP_001278591.1	malic enzyme-like NAD(P)-binding protein	-
VAA049_RS01170 (VAA049_224)	rpmE	244797..245015 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
VAA049_RS01175 (VAA049_225)	priA	245270..247474 (+)	2205	WP_046121311.1	primosomal protein N'	-
VAA049_RS01180 (VAA049_226)	cytR	247780..248787 (+)	1008	WP_046121312.1	DNA-binding transcriptional regulator CytR	Regulator
VAA049_RS01185 (VAA049_227)	-	248958..249509 (+)	552	WP_046121313.1	SPOR domain-containing protein	-
VAA049_RS01190 (VAA049_228)	hslV	249646..250203 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
VAA049_RS01195 (VAA049_229)	hslU	250269..251600 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
VAA049_RS01200 (VAA049_230)	-	251704..252621 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VAA049_RS01205 (VAA049_231)	rraA	252696..253211 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37004.52 Da
• Isoelectric Point: 6.8257

>NTDB_id=139928 VAA049_RS01180 WP_046121312.1 247780..248787(+) (cytR) [Vibrio cholerae strain 1154-74]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQNRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=139928 VAA049_RS01180 WP_046121312.1 247780..248787(+) (cytR) [Vibrio cholerae strain 1154-74]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGCAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAATCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTAATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACATGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	99.701	100	0.997
cytR	Vibrio parahaemolyticus RIMD 2210633	90.419	99.701	0.901