Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NY10_RS11805 Genome accession   NZ_CP010796
Coordinates   2485062..2486774 (+) Length   570 a.a.
NCBI ID   WP_058920118.1    Uniprot ID   A0A0U3FA23
Organism   Carnobacterium sp. CP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2480062..2491774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY10_RS11775 (NY10_2359) folD 2480201..2481046 (+) 846 WP_058920325.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  NY10_RS11780 (NY10_2360) xseA 2481074..2482414 (+) 1341 WP_058920113.1 exodeoxyribonuclease VII large subunit -
  NY10_RS11785 (NY10_2361) - 2482411..2482647 (+) 237 WP_058920114.1 exodeoxyribonuclease VII small subunit -
  NY10_RS11790 (NY10_2362) - 2482665..2483564 (+) 900 WP_058920115.1 polyprenyl synthetase family protein -
  NY10_RS11795 (NY10_2363) - 2483583..2484410 (+) 828 WP_058920116.1 TlyA family RNA methyltransferase -
  NY10_RS11800 (NY10_2364) argR 2484575..2485024 (+) 450 WP_058920117.1 transcriptional regulator ArgR -
  NY10_RS11805 (NY10_2365) recN 2485062..2486774 (+) 1713 WP_058920118.1 DNA repair protein RecN Machinery gene
  NY10_RS11810 (NY10_2366) - 2487220..2488176 (-) 957 WP_058920119.1 magnesium transporter CorA family protein -
  NY10_RS11815 (NY10_2367) - 2488341..2489465 (+) 1125 WP_058920120.1 M20/M25/M40 family metallo-hydrolase -
  NY10_RS11820 (NY10_2368) gndA 2489580..2491013 (+) 1434 WP_058920121.1 NADP-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 64377.38 Da        Isoelectric Point: 4.8911

>NTDB_id=139854 NY10_RS11805 WP_058920118.1 2485062..2486774(+) (recN) [Carnobacterium sp. CP1]
MLQELTIKNFAIIHDLNLSFESGMTVLTGETGAGKSIIIDAVGLLAGGRGSNEFIRHGESKCVLEGLFSIEDNQLTYELL
NSYDIEMEDGTLIIQRDIHRNGKNVCRINGRLVNIATLRLIGETIIDIHGQNEHQELMNPERHLAMLDQFGDKELHRLKA
AYGTTYAAYKEVKKAYDKWQNSEQELAQRLDMLQFQVNDIEMAELGDHEEEELLEEKNLLMNYQKITAALSGSYDALQGE
ENSGIDLIGQAMSEMSSIEDIDGTYKLLSETIANSYFQLQEAASDILREMDQMAYDENRLNDIEKRLELIHQMKRKYGDS
IAEIKSYYEKIAVELLQIQNREDHINHLIKELNTLSEKVIQQGKTLTKKRQSVAKQLEAAIHEQLKELFMEKVVFEVQFF
NGKAEPTLETAREIGLDHVEFYIATNLGEPLKSLAKVASGGELSRMMLALKTIFSKSQGITSIIFDEVDTGVSGRVAQAI
ANKIYMVAIHSQVLCITHLPQVAAMADHHLFISKTIVAERTETHVEALAEPQKVEEVARMLAGTEITKLTLEHAKELREL
AKNQKTKQLN

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=139854 NY10_RS11805 WP_058920118.1 2485062..2486774(+) (recN) [Carnobacterium sp. CP1]
TTGTTACAAGAATTAACCATTAAAAACTTTGCCATCATTCATGATTTGAATCTAAGTTTTGAATCGGGTATGACAGTTTT
AACAGGGGAAACCGGAGCAGGGAAATCCATTATTATTGATGCAGTCGGCTTATTGGCTGGTGGACGCGGTTCAAATGAAT
TCATTCGTCATGGTGAGAGCAAATGTGTCTTGGAAGGGTTGTTTTCAATTGAAGACAATCAACTGACTTATGAGTTGCTA
AATTCTTATGATATTGAAATGGAGGATGGCACCCTTATTATTCAACGAGATATTCATCGCAATGGTAAAAATGTCTGCCG
CATCAATGGACGCCTGGTGAATATTGCGACTTTACGTTTAATAGGAGAAACGATCATTGATATTCATGGTCAAAACGAGC
ACCAAGAGCTAATGAACCCTGAGCGGCACTTGGCAATGTTAGATCAATTTGGAGATAAAGAGCTGCACCGGCTTAAAGCC
GCTTACGGAACAACCTATGCTGCTTACAAAGAAGTTAAAAAAGCCTATGATAAATGGCAAAATAGTGAACAAGAATTGGC
GCAACGTTTGGATATGCTGCAGTTTCAAGTGAATGATATTGAAATGGCTGAGCTAGGCGATCATGAGGAAGAAGAGTTGT
TGGAAGAAAAAAATCTATTAATGAATTACCAAAAGATCACAGCGGCTTTATCAGGCAGTTATGATGCTTTACAGGGTGAA
GAAAACAGCGGGATCGATCTGATTGGTCAAGCTATGTCCGAAATGAGTTCAATTGAAGACATTGATGGTACGTACAAACT
TTTATCAGAAACGATTGCAAATAGTTACTTTCAATTGCAAGAAGCAGCAAGCGACATCTTAAGAGAAATGGATCAAATGG
CTTATGATGAAAATCGGTTAAATGATATTGAAAAACGGTTGGAATTGATTCACCAAATGAAGCGTAAATATGGAGATTCT
ATTGCAGAGATCAAATCTTATTATGAAAAAATTGCCGTAGAACTGCTTCAAATCCAAAACCGAGAAGATCACATTAATCA
TTTGATCAAAGAACTGAATACTCTTTCGGAAAAGGTGATTCAGCAAGGCAAAACCTTGACGAAAAAGCGACAAAGCGTTG
CAAAACAATTAGAAGCGGCCATTCATGAACAACTAAAAGAATTATTCATGGAAAAAGTTGTTTTTGAGGTACAATTTTTT
AATGGAAAAGCGGAACCAACGTTAGAAACCGCCCGAGAAATAGGATTAGATCATGTAGAATTTTATATCGCGACTAATTT
AGGAGAACCTTTAAAATCACTAGCTAAAGTGGCCTCTGGGGGAGAATTATCCAGAATGATGTTAGCGTTGAAAACTATTT
TTTCAAAGTCACAAGGCATTACCAGTATCATTTTTGATGAAGTCGATACGGGTGTCAGCGGGCGTGTGGCACAAGCGATT
GCAAACAAAATTTATATGGTTGCGATTCATTCGCAAGTTTTATGTATTACCCATTTGCCGCAAGTAGCGGCGATGGCGGA
TCATCATTTATTTATATCAAAAACAATAGTAGCTGAACGGACAGAAACACATGTTGAAGCATTGGCAGAACCTCAAAAAG
TAGAAGAAGTTGCCAGAATGTTGGCTGGAACTGAAATTACAAAGCTAACGCTAGAACATGCAAAAGAACTGCGCGAATTA
GCGAAAAATCAAAAAACAAAACAATTAAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3FA23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.396

100

0.502

Multiple sequence alignment