Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NY10_RS08335 Genome accession   NZ_CP010796
Coordinates   1757947..1759317 (-) Length   456 a.a.
NCBI ID   WP_058920296.1    Uniprot ID   -
Organism   Carnobacterium sp. CP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1752947..1764317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY10_RS08315 (NY10_1709) epsC 1753131..1753661 (-) 531 WP_058919533.1 serine O-acetyltransferase EpsC -
  NY10_RS08320 (NY10_1710) gltX 1754045..1755514 (-) 1470 WP_058919534.1 glutamate--tRNA ligase -
  NY10_RS12700 ispF 1755538..1756014 (-) 477 WP_197409005.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NY10_RS12705 ispD 1756114..1756743 (-) 630 Protein_1654 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NY10_RS08330 (NY10_1712) - 1756754..1757863 (-) 1110 WP_058919536.1 PIN/TRAM domain-containing protein -
  NY10_RS08335 (NY10_1713) radA 1757947..1759317 (-) 1371 WP_058920296.1 DNA repair protein RadA Machinery gene
  NY10_RS08340 (NY10_1714) - 1759550..1760083 (-) 534 WP_058919537.1 dUTP diphosphatase -
  NY10_RS08345 (NY10_1715) ugpC 1760627..1761733 (+) 1107 WP_058919538.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  NY10_RS08350 (NY10_1716) - 1761850..1762404 (-) 555 WP_058919539.1 sugar O-acetyltransferase -
  NY10_RS08355 (NY10_1717) gntK 1762484..1764019 (-) 1536 WP_082664222.1 gluconokinase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49415.05 Da        Isoelectric Point: 8.3230

>NTDB_id=139841 NY10_RS08335 WP_058920296.1 1757947..1759317(-) (radA) [Carnobacterium sp. CP1]
MAKKIATKFVCQACGYESPKWMGRCPNCGAWNQMEEEIIADKNNRRSRVSMAGKTAKAQAIEDITVSKIPRVKTKLAELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSAQLNQAGGKVLYVSGEESAGQLKMSANRLGVKGSDFYIYPETDMAAIRQ
TIEEIQPDFVIIDSIQTMSQPDVSSVVGSVSQVRESTADLMKIAKTNNIAIFIVGHVTKEGSIAGPKMLEHMVDTVLYFE
GDRHHTFRILRAVKNRFGSTNEIGIFEMREGGLVEVVNPSEMFLEERLAGATGSAVVSAMEGTRPILVEIQSLITPTVFG
NAKRTVSGLDHNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYQEKETRPKDCFIGELGLTG
EVRRVSRIDQRVQEAAKLGFTRLFIPKNNIGGWTFPEGIEIVGVTTIADTIRKAFA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=139841 NY10_RS08335 WP_058920296.1 1757947..1759317(-) (radA) [Carnobacterium sp. CP1]
GTGGCAAAAAAAATAGCAACAAAGTTTGTCTGCCAGGCTTGTGGATATGAATCCCCAAAATGGATGGGCCGCTGCCCAAA
CTGTGGCGCATGGAACCAAATGGAAGAAGAAATAATAGCAGATAAAAACAATCGTAGAAGCCGAGTCAGTATGGCTGGTA
AAACAGCTAAGGCACAGGCTATAGAAGACATTACCGTTTCTAAAATCCCCAGAGTAAAAACTAAGCTAGCTGAACTGAAC
CGTGTATTAGGCGGAGGAGTTGTTCCTGGATCAATGGTGTTGATCGGTGGAGACCCGGGTATCGGAAAATCTACTTTGCT
GCTGCAAGTCTCTGCCCAGCTCAATCAAGCAGGCGGAAAAGTTCTTTATGTATCAGGCGAAGAAAGTGCCGGCCAATTGA
AAATGAGTGCCAATCGTTTAGGTGTAAAAGGTTCAGATTTTTATATTTATCCGGAAACGGATATGGCTGCCATTCGTCAG
ACTATCGAAGAGATCCAACCGGATTTTGTGATCATTGATTCCATTCAAACGATGAGCCAACCCGATGTTTCAAGTGTGGT
CGGAAGTGTGAGCCAAGTACGTGAAAGTACCGCTGATTTAATGAAAATTGCTAAAACAAATAATATTGCTATTTTTATCG
TTGGGCATGTAACCAAAGAAGGATCGATTGCCGGACCGAAAATGCTGGAACATATGGTAGACACCGTGCTTTATTTTGAA
GGCGACCGACACCACACGTTCCGAATTTTACGGGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATCGGCATCTTCGA
GATGCGAGAAGGCGGTCTAGTCGAAGTCGTGAACCCTTCAGAAATGTTTTTGGAAGAGCGACTAGCGGGTGCAACCGGCT
CTGCCGTTGTTTCAGCCATGGAAGGTACCAGGCCGATTTTGGTAGAGATTCAGTCACTGATCACGCCGACTGTGTTTGGA
AATGCTAAACGGACGGTTAGCGGACTAGATCATAACCGTGTATCTTTGATCATGGCTGTCTTAGAAAAACGAGCAGGGTT
ATTGCTGCAAAATCAGGATGCTTATCTAAAAGCAGCAGGCGGTGTAAAATTGGATGAACCTGCAATTGATTTAGCCATTG
CCGTCAGTATTGCTTCAAGTTACCAAGAAAAAGAAACACGGCCTAAAGACTGTTTTATCGGAGAATTAGGTTTAACAGGA
GAAGTCCGGCGCGTAAGCCGAATTGATCAACGAGTTCAAGAAGCTGCTAAATTAGGCTTTACTCGCTTGTTTATACCCAA
AAACAACATTGGCGGCTGGACGTTCCCGGAAGGAATTGAAATCGTCGGTGTTACAACTATAGCCGATACGATCCGTAAAG
CATTCGCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

69.737

100

0.697
  radA Streptococcus pneumoniae D39

69.737

100

0.697
  radA Streptococcus pneumoniae R6

69.737

100

0.697
  radA Streptococcus pneumoniae TIGR4

69.737

100

0.697
  radA Streptococcus mitis NCTC 12261

69.737

100

0.697
  radA Streptococcus mitis SK321

69.737

100

0.697
  radA Bacillus subtilis subsp. subtilis str. 168

68.062

99.561

0.678

Multiple sequence alignment