Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ATC05_RS17430 Genome accession   NZ_CP013245
Coordinates   3764540..3765982 (+) Length   480 a.a.
NCBI ID   WP_060627762.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain VA-134     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3759540..3770982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATC05_RS17410 (ATC05_17395) - 3760208..3761779 (-) 1572 WP_060627760.1 DUF4129 domain-containing protein -
  ATC05_RS17415 (ATC05_17400) - 3761766..3762746 (-) 981 WP_003093893.1 stage II sporulation protein M -
  ATC05_RS17420 (ATC05_17405) - 3762743..3763540 (-) 798 WP_003134638.1 RDD family protein -
  ATC05_RS17425 (ATC05_17410) - 3763578..3764315 (-) 738 WP_022579572.1 hypothetical protein -
  ATC05_RS17430 (ATC05_17415) sbcB 3764540..3765982 (+) 1443 WP_060627762.1 exodeoxyribonuclease I Machinery gene
  ATC05_RS17435 (ATC05_17420) mvaT 3766067..3766441 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  ATC05_RS17440 (ATC05_17425) purU 3766701..3767552 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  ATC05_RS17445 (ATC05_17430) - 3767602..3767814 (+) 213 WP_003093886.1 hypothetical protein -
  ATC05_RS17450 (ATC05_17435) - 3767789..3768790 (-) 1002 WP_016852096.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ATC05_RS17455 (ATC05_17440) - 3768787..3769548 (-) 762 WP_003101179.1 DUF2334 domain-containing protein -
  ATC05_RS17460 (ATC05_17445) - 3769541..3770656 (-) 1116 WP_003101181.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55503.84 Da        Isoelectric Point: 5.5542

>NTDB_id=139822 ATC05_RS17430 WP_060627762.1 3764540..3765982(+) (sbcB) [Pseudomonas aeruginosa strain VA-134]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYIRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=139822 ATC05_RS17430 WP_060627762.1 3764540..3765982(+) (sbcB) [Pseudomonas aeruginosa strain VA-134]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAACTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGTTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATATCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTTCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438

Multiple sequence alignment