Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   APQ13_RS05065 Genome accession   NZ_CP013237
Coordinates   1070821..1072479 (-) Length   552 a.a.
NCBI ID   WP_002264714.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065821..1077479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS05040 (APQ13_05035) - 1066422..1067540 (+) 1119 WP_002289724.1 Acg family FMN-binding oxidoreductase -
  APQ13_RS09910 - 1067731..1067868 (+) 138 Protein_1005 IS3 family transposase -
  APQ13_RS05045 (APQ13_05040) - 1067961..1068236 (-) 276 WP_002262099.1 HU family DNA-binding protein -
  APQ13_RS05050 (APQ13_05045) - 1068333..1068932 (-) 600 WP_002264716.1 YpmS family protein -
  APQ13_RS05055 (APQ13_05050) - 1068907..1069764 (-) 858 WP_002262101.1 SGNH/GDSL hydrolase family protein -
  APQ13_RS05060 (APQ13_05055) - 1069757..1070596 (-) 840 WP_002268053.1 DegV family protein -
  APQ13_RS05065 (APQ13_05060) recN 1070821..1072479 (-) 1659 WP_002264714.1 DNA repair protein RecN Machinery gene
  APQ13_RS05070 (APQ13_05065) - 1072496..1072960 (-) 465 WP_002264713.1 arginine repressor -
  APQ13_RS05075 (APQ13_05070) - 1072947..1073774 (-) 828 WP_002264712.1 TlyA family RNA methyltransferase -
  APQ13_RS05080 (APQ13_05075) - 1073767..1074636 (-) 870 WP_002264711.1 polyprenyl synthetase family protein -
  APQ13_RS05085 (APQ13_05080) - 1074633..1074854 (-) 222 WP_002262107.1 exodeoxyribonuclease VII small subunit -
  APQ13_RS05090 (APQ13_05085) xseA 1074829..1076172 (-) 1344 WP_002264710.1 exodeoxyribonuclease VII large subunit -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62679.16 Da        Isoelectric Point: 5.0564

>NTDB_id=139679 APQ13_RS05065 WP_002264714.1 1070821..1072479(-) (recN) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MLLEIAIKNFAIIEEISLNFERGMTVLTGETGAGKSIVIDAMNMMLGSRASIDVIRHGSPKAEIEGFFSVDKNPSLEQLL
ADQGIAFSDELIIRREILQNGRSISRINGQMVNLATLRAVGQYLVDIHGQHDQEELMRPQKHIQLLDEFGDEVFQVSKQH
YQDLFDRYRDLRKHVLNKRKNEQEYQVRIEMLEYQIGEIEAANLQSGEDTKLLKQRDKLMNHKLIVDTLTNAYVLLDNED
FSSLTNVRSAMNDLQSLEEYDAEYKDLSNNLSESYYILEDVSKRLETILDHMDFDANTLVKLEARLDVINTITRKYGGSV
DDVLAYFDNISKEYNHLTGNGLAFDDMEKELKILERSLLEAAAQLSQKRHAIAETLSQEIKQELKDLYMDKADFKVVFTK
GKFNREGNETVAFHISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRREDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
NHGQVLAISHIPQVIAISDYQYFIEKQSSKATTVSTVRLLNQEERIEEIAKMLAGDNVTQAARQQAKELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=139679 APQ13_RS05065 WP_002264714.1 1070821..1072479(-) (recN) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGCTTTTAGAAATTGCCATTAAAAATTTTGCTATTATTGAAGAAATCTCACTCAATTTTGAAAGGGGAATGACTGTTCT
GACCGGTGAAACAGGTGCAGGGAAGTCTATTGTCATTGATGCCATGAATATGATGCTAGGCAGTAGAGCCAGCATAGATG
TCATTCGTCATGGCAGTCCTAAAGCAGAGATTGAGGGTTTTTTCTCTGTGGATAAAAATCCTTCTTTAGAGCAGTTACTG
GCTGATCAGGGAATTGCTTTTTCAGATGAGCTAATCATTCGCCGTGAGATTTTACAAAATGGTCGCAGTATTAGTCGTAT
CAATGGTCAAATGGTTAATCTGGCAACTCTGCGTGCCGTTGGGCAGTATTTAGTTGATATTCATGGACAGCATGATCAAG
AAGAACTGATGCGGCCGCAAAAGCATATTCAGTTGTTGGATGAATTTGGTGATGAGGTATTTCAGGTAAGCAAGCAGCAT
TATCAGGACTTATTTGACCGCTATCGGGACTTACGTAAGCACGTCTTGAATAAGCGTAAGAATGAGCAAGAATATCAAGT
ACGTATTGAAATGCTGGAGTATCAGATAGGAGAGATTGAAGCAGCAAACTTACAATCTGGTGAGGATACCAAGCTCTTAA
AACAACGTGATAAACTTATGAATCATAAGCTTATTGTTGATACCTTAACCAATGCTTATGTTTTACTTGATAATGAAGAT
TTTTCGAGTTTGACCAATGTTCGTTCAGCTATGAATGATTTGCAGAGTTTGGAAGAATATGATGCTGAGTACAAGGATTT
GTCCAATAATCTCAGCGAATCTTACTATATTTTAGAAGATGTTAGCAAACGTCTAGAGACCATACTGGATCATATGGATT
TTGATGCCAATACTTTGGTTAAACTTGAAGCACGTCTTGATGTTATCAACACCATCACGCGTAAGTATGGTGGTTCAGTT
GATGATGTTTTGGCTTATTTTGACAATATCAGTAAGGAATACAATCATTTGACGGGAAATGGCCTCGCTTTTGATGATAT
GGAAAAAGAACTAAAAATTTTGGAGCGCTCACTATTAGAAGCAGCAGCTCAATTGAGTCAAAAACGCCATGCCATTGCGG
AAACCTTGTCTCAGGAGATTAAGCAGGAACTAAAAGATCTCTACATGGATAAGGCTGATTTTAAAGTTGTTTTTACTAAA
GGAAAATTTAATCGCGAGGGAAATGAAACAGTCGCTTTTCATATTTCGACTAATCCTGGCGAAGACTTTAAGCCTTTGGT
CAAAGTCGCTTCTGGTGGAGAGCTGTCTCGTCTCATGTTAGCCATTAAGTCAGCTTTTTCACGTCGTGAAGATAAGACTA
GCATTGTTTTTGATGAAGTTGATACAGGTGTTTCAGGACGTGTCGCTCAGGCTATTGCTCAAAAAATTTACAAAATAGGC
AATCACGGTCAAGTTTTAGCTATCTCCCATATCCCGCAAGTCATTGCCATCAGTGATTATCAGTACTTTATTGAAAAACA
AAGCAGCAAAGCCACAACTGTCTCAACGGTTCGCCTTTTAAATCAAGAGGAAAGAATTGAAGAAATCGCTAAGATGTTGG
CAGGGGATAATGTGACCCAAGCTGCGCGCCAGCAAGCTAAAGAACTATTAAAAAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.882

100

0.442