Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   APQ13_RS03580 Genome accession   NZ_CP013237
Coordinates   739260..741062 (-) Length   600 a.a.
NCBI ID   WP_002263293.1    Uniprot ID   Q8DUK5
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 734260..746062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS03555 (APQ13_03550) - 734684..735370 (-) 687 WP_002263646.1 response regulator transcription factor -
  APQ13_RS03560 (APQ13_03555) - 735371..735994 (-) 624 WP_002268771.1 GTP pyrophosphokinase -
  APQ13_RS03565 (APQ13_03560) - 736234..736668 (-) 435 WP_019319662.1 hypothetical protein -
  APQ13_RS03570 (APQ13_03565) tpx 736834..737319 (-) 486 WP_002263295.1 thiol peroxidase -
  APQ13_RS03575 (APQ13_03570) rcrQ 737516..739270 (-) 1755 WP_002263294.1 ABC transporter ATP-binding protein Regulator
  APQ13_RS03580 (APQ13_03575) rcrP 739260..741062 (-) 1803 WP_002263293.1 ABC transporter ATP-binding protein Regulator
  APQ13_RS03585 (APQ13_03580) rcrR 741066..741500 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  APQ13_RS03590 (APQ13_03585) queC 742052..742705 (+) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  APQ13_RS03595 (APQ13_03590) queD 742705..743151 (+) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  APQ13_RS03600 (APQ13_03595) queE 743148..743864 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  APQ13_RS03605 (APQ13_03600) queF 743877..744365 (+) 489 WP_002265143.1 preQ(1) synthase -
  APQ13_RS03610 (APQ13_03605) - 744474..744857 (+) 384 WP_002265142.1 DUF3021 family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66968.76 Da        Isoelectric Point: 9.6602

>NTDB_id=139664 APQ13_RS03580 WP_002263293.1 739260..741062(-) (rcrP) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MFKIFKRLNAKEWGMVLLSTAFICLAVWMDLKTPEYMSNITTLLQTKGTTASDIMDPGSKMLMFSFGSFFMAVLVGFLAS
RTAASFTTRLRSDIFNRVMDYSEAEIKKFSIPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAVWALTKIWGKSDEWTGA
VGVAVLIVFIMLSVLMFVAFPRQRQVQSLTDALNSTTRESLTGVRVVRAYNAEDYQDTKFKRENKNLTKLNLLVYRLMSL
MNPVMTVVSSGLTLAIYWIGAYLLNDIKIPMTSVTAAKGAIADRISVFSDMVVFSSYAMQVVVGFMMMVAIFIILPRALV
SAKRINEVLALNSSVHFKEYSKADNARKGEVEFHDVSFRYSKNSRAVIEHVSFSAKAGETVAFIGSTGSGKSTLVNLIPR
FYDATEGWIKIDGIKVQDYSHDDLNNKVGYIPQRAVLFSGTIRSNIAFGQSDQAPLDDAKIWEALELAQAKNFVEEKEKG
LDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRNDLAKKTKEMTKLIVAQRISTIMDADHIL
VLDQGKVVGQGTHKELLANNDIYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=139664 APQ13_RS03580 WP_002263293.1 739260..741062(-) (rcrP) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGTTTAAAATTTTTAAACGTCTAAATGCTAAAGAATGGGGCATGGTTCTCCTTAGTACTGCCTTTATCTGTTTGGCTGT
CTGGATGGATTTGAAGACGCCCGAATATATGTCCAACATTACAACCTTGCTGCAGACTAAGGGAACGACCGCCTCAGATA
TTATGGATCCGGGATCTAAGATGCTCATGTTTTCATTTGGGAGCTTTTTTATGGCCGTTCTAGTTGGTTTTTTAGCTTCA
AGAACAGCTGCTAGCTTTACGACCCGTCTTCGATCTGATATTTTCAATCGGGTTATGGATTATTCAGAGGCGGAAATCAA
GAAATTTTCCATTCCCAGCCTTCTAACGCGTACGACTAATGATTTGACACAGTTGCAAATCATGATCGTTATGGGAATGC
AAGTGGTGACACGCGGTCCAATCATGGCTGTTTGGGCCTTGACTAAAATCTGGGGTAAAAGCGATGAATGGACAGGAGCA
GTCGGTGTTGCCGTTTTAATTGTCTTTATTATGCTGTCTGTTTTGATGTTTGTCGCTTTTCCAAGACAGCGTCAGGTGCA
GAGCTTGACGGATGCTCTAAATTCTACAACCCGTGAATCTCTGACTGGTGTTCGTGTTGTTCGGGCTTACAATGCAGAAG
ATTATCAGGACACTAAATTTAAGCGGGAAAATAAAAACCTGACGAAATTGAATTTATTGGTCTATCGTCTGATGTCGCTA
ATGAATCCTGTCATGACAGTTGTTTCCAGTGGTCTAACTTTAGCTATTTATTGGATTGGAGCTTACCTGCTCAATGATAT
TAAAATTCCTATGACGAGTGTGACAGCTGCTAAAGGAGCTATTGCTGATCGTATCAGTGTTTTTAGTGATATGGTTGTCT
TTTCATCTTATGCCATGCAGGTTGTTGTCGGTTTTATGATGATGGTCGCTATCTTTATCATTTTACCGCGTGCTTTAGTT
TCTGCCAAACGAATTAATGAAGTATTGGCGCTTAACTCATCTGTACACTTCAAAGAATATTCTAAAGCAGACAATGCTCG
AAAAGGAGAAGTCGAATTTCATGATGTATCGTTTCGTTACAGTAAAAATTCTCGTGCGGTTATTGAGCATGTGTCTTTCA
GTGCTAAAGCTGGTGAGACAGTTGCTTTTATTGGTTCCACTGGCTCAGGAAAATCAACTCTTGTTAATCTGATTCCTCGT
TTTTATGATGCTACAGAAGGTTGGATTAAGATAGATGGAATCAAAGTGCAAGATTACAGCCATGATGACCTCAACAATAA
AGTCGGCTATATTCCGCAAAGGGCGGTGCTTTTTAGTGGGACCATTCGTTCTAATATTGCATTTGGGCAAAGCGATCAAG
CGCCGCTTGATGATGCTAAAATTTGGGAGGCTCTTGAACTAGCCCAAGCCAAAAACTTTGTTGAAGAAAAAGAAAAGGGT
CTGGATACCGAGGTAGCTCAAGGCGGTACCAACTTCTCTGGCGGTCAAAAGCAGCGCTTAGCTATTGCCCGTGCACTTGC
ACGCAAACCAGAAATTCTTATTTTTGATGACTCCTTCTCAGCTCTTGATTATAAGACGGATCGCATTCTGCGAAATGATT
TGGCAAAGAAAACCAAAGAAATGACTAAGTTGATTGTAGCCCAACGTATTTCAACTATTATGGATGCTGATCATATTTTG
GTCTTAGATCAAGGAAAGGTTGTTGGTCAAGGAACACACAAGGAATTACTGGCTAATAACGATATTTATCAAGAAATTGC
TTATTCACAACTATCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(369-518)

ABC transporter transmembrane region (ABC_membrane)

(17-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DUK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

100

100

1

Multiple sequence alignment