Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   HSISS4_RS07415 Genome accession   NZ_CP013216
Coordinates   1641811..1642548 (-) Length   245 a.a.
NCBI ID   WP_021143758.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1636811..1647548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS07395 (HSISS4_01443) - 1638136..1638384 (-) 249 WP_002884680.1 KH domain-containing protein -
  HSISS4_RS07400 (HSISS4_01444) rpsP 1638396..1638668 (-) 273 WP_002884675.1 30S ribosomal protein S16 -
  HSISS4_RS07405 (HSISS4_01445) - 1638831..1640210 (-) 1380 WP_021143760.1 hypothetical protein -
  HSISS4_RS07410 (HSISS4_01446) - 1640322..1641500 (-) 1179 WP_037620206.1 sensor histidine kinase -
  HSISS4_RS07415 (HSISS4_01447) comE/comE1 1641811..1642548 (-) 738 WP_021143758.1 LytR/AlgR family response regulator transcription factor Regulator
  HSISS4_RS07420 (HSISS4_01448) - 1642762..1644033 (+) 1272 WP_021143757.1 matrixin family metalloprotease -
  HSISS4_RS07425 (HSISS4_01449) tehB 1644447..1645325 (+) 879 WP_002884191.1 SAM-dependent methyltransferase TehB -
  HSISS4_RS07430 (HSISS4_01450) - 1645409..1646161 (-) 753 WP_021143756.1 DUF4767 domain-containing protein -
  HSISS4_RS07435 (HSISS4_01451) - 1646257..1647306 (-) 1050 WP_002884530.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28132.10 Da        Isoelectric Point: 4.7169

>NTDB_id=139513 HSISS4_RS07415 WP_021143758.1 1641811..1642548(-) (comE/comE1) [Streptococcus salivarius strain HSISS4]
MLSIIVLEDDALQRHRVGRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDVDLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVNNVTSVDRTANMVFFEENESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=139513 HSISS4_RS07415 WP_021143758.1 1641811..1642548(-) (comE/comE1) [Streptococcus salivarius strain HSISS4]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCACCGTGTTGGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACTTTTTATGAACAGGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACTAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATTGCCTTTGTTACAGCTTACTCGGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
AGACTTTGTCGATAAATCCATGGAAGATGTGGATCTTAAGAGAGCTTTAGTAGAACTTTTAGATTTTGCTTATTCACAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTAACTGTTAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAGACAGCCCCTGTGCCACATAAGTTAATCGCTCATACCAAGTCAAACCTAGTGGAATTCTATGGGAAAATTGC
AGAAGTAGCAAAATTGGATGATATTTTCTTCCAAACGCACCGCTCTTTTGTTGTCAATGTGAATAATGTGACAAGTGTGG
ATCGTACAGCTAATATGGTCTTCTTTGAGGAAAATGAGTCATGCCTCCTATCGCGGACACGTAAAAAGGAACTTTTGGAA
CGTTTGAAAAATCGTTAG

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(152-242)

Response regulator receiver domain (Response_reg)

(4-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.449

99.184

0.371

Multiple sequence alignment