Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   HSISS4_RS04860 Genome accession   NZ_CP013216
Coordinates   1021808..1022878 (+) Length   356 a.a.
NCBI ID   WP_002884881.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1016808..1027878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS04840 (HSISS4_00929) glgP 1016910..1019171 (+) 2262 WP_059749159.1 glycogen/starch/alpha-glucan family phosphorylase -
  HSISS4_RS09880 (HSISS4_00930) - 1019282..1020409 (-) 1128 WP_021144175.1 hypothetical protein -
  HSISS4_RS04855 (HSISS4_00931) - 1020533..1021522 (+) 990 WP_021144174.1 lipoate--protein ligase -
  HSISS4_RS04860 (HSISS4_00932) xerS 1021808..1022878 (+) 1071 WP_002884881.1 tyrosine recombinase XerS Machinery gene
  HSISS4_RS04865 (HSISS4_00933) - 1023041..1025581 (-) 2541 WP_038676020.1 M1 family metallopeptidase -
  HSISS4_RS04870 (HSISS4_00934) phoU 1025715..1026368 (-) 654 WP_021146873.1 phosphate signaling complex protein PhoU -
  HSISS4_RS04875 (HSISS4_00935) pstB 1026397..1027155 (-) 759 WP_002884992.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41397.47 Da        Isoelectric Point: 9.3734

>NTDB_id=139495 HSISS4_RS04860 WP_002884881.1 1021808..1022878(+) (xerS) [Streptococcus salivarius strain HSISS4]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=139495 HSISS4_RS04860 WP_002884881.1 1021808..1022878(+) (xerS) [Streptococcus salivarius strain HSISS4]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAGGAATACAAATCTCTAATGCCCTGGTTTGTTCTAGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTTACAACCCTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTCCTTTATTTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACGACTATTAA
TCGTACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCTTATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCTCGTGCTGAGAATATCAAACAGAAA
CTCTTTCTAGGCGATGAGACCATGGAATTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCTAA
ATCATCGTTTTATAAGAATAAAGAACGTGATTTAGCTATCATTGCCTTGCTGCTGGCTTCAGGTGTTCGACTCTCTGAAG
CTGTTAATCTAGACCTTAAAGATATCAATCTTAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTTGCAAGTTTTGCAAAGCCCTATCTTGAAACTTATCTCAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAGATGGTTGCCA
AATATTCTCAGGATTTCAAAATTCGTGTGACTCCCCACAAGCTTCGACATACTCTGGCAACACGCCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGTCACCAACTTGGTCATGCTTCCACTCAGGTCACCGATCTATATACGCATATTGTTAATGA
TGAGCAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834