Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HSISS4_RS04080 Genome accession   NZ_CP013216
Coordinates   837637..839307 (+) Length   556 a.a.
NCBI ID   WP_013990722.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 832637..844307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS04050 (HSISS4_00770) - 833022..833783 (+) 762 WP_002890759.1 hypothetical protein -
  HSISS4_RS04055 (HSISS4_00771) xseA 833970..835298 (+) 1329 WP_021144302.1 exodeoxyribonuclease VII large subunit -
  HSISS4_RS04060 (HSISS4_00772) - 835288..835503 (+) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  HSISS4_RS04065 (HSISS4_00773) - 835503..836375 (+) 873 WP_021146951.1 polyprenyl synthetase family protein -
  HSISS4_RS04070 (HSISS4_00774) - 836368..837195 (+) 828 WP_002884054.1 TlyA family RNA methyltransferase -
  HSISS4_RS04075 (HSISS4_00775) - 837182..837628 (+) 447 WP_013990723.1 arginine repressor -
  HSISS4_RS04080 (HSISS4_00776) recN 837637..839307 (+) 1671 WP_013990722.1 DNA repair protein RecN Machinery gene
  HSISS4_RS04085 (HSISS4_00777) - 839377..840219 (+) 843 WP_021144300.1 DegV family protein -
  HSISS4_RS04090 (HSISS4_00778) - 840212..841087 (+) 876 WP_021144299.1 SGNH/GDSL hydrolase family protein -
  HSISS4_RS04095 (HSISS4_00779) - 841080..841652 (+) 573 WP_021144298.1 YpmS family protein -
  HSISS4_RS04100 (HSISS4_00780) - 841789..842064 (+) 276 WP_002884048.1 HU family DNA-binding protein -
  HSISS4_RS04105 (HSISS4_00781) - 842124..842324 (+) 201 WP_002883994.1 hypothetical protein -
  HSISS4_RS04110 (HSISS4_00782) - 842386..843321 (-) 936 WP_021144297.1 dihydroorotate oxidase -
  HSISS4_RS04115 (HSISS4_00783) - 843576..844268 (+) 693 WP_002884137.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62255.33 Da        Isoelectric Point: 4.5834

>NTDB_id=139488 HSISS4_RS04080 WP_013990722.1 837637..839307(+) (recN) [Streptococcus salivarius strain HSISS4]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPSLVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQGYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDLLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIATALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=139488 HSISS4_RS04080 WP_013990722.1 837637..839307(+) (recN) [Streptococcus salivarius strain HSISS4]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCTATGAATCTTATGTTGGGCGCACGTGCTTCTAGTGAAG
TCGTCCGTCATTCAGCATCTAAGGCTGAAATTCAAGGCTTCTTTTCAATCGAACAAAATCCTTCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTCGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGTAT
CAATGGACAGATGGTCAATTTAACGACGCTTAAAGCTGTTGGGCACTTCTTGGTAGATATCCATGGACAGCATGACCAGG
AAGAACTTATGAAACCTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAAACTAAGAAAGAA
TACCAAGGGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCCGTTCTTGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCATTGATGA
AGGAGCGAGACAAGCTTCTTAACCATAAGCAGATTGCGGATACCTTAACCAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGCCTTTCAAATGTCCGTTCTGCTATGAACGACCTCCAGTCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTCTTGAAGATGTCACTAAGCAACTTGGTGACCTTTTGGATAATTTGGATT
TTGATGCTGGGCGTTTGCAAGAGATTGAACACCGCTTAGATACGATTAATGCAATTACTCGTAAATATGGTGGAACTGTT
GATGACGTCCTAGATTATCTGGAAAATTCAAGTAAAGAGTACAATCTTTTGACTGGCAATTCCAGCTCGTCAGATGCCAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACCTGCTTGCATCTGCAGAGACCCTACAAACGGCACGCCATCAAATTGCTA
CAGCCCTTGAAGCTGAGATTAAGAACGAGTTATGCGACCTTTACATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAA
GGGAAATTTAACCGTGATGGCAATGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTTGCTTCAGGAGGAGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGACAAAACAA
GTATCGTCTTTGATGAGGTTGATACTGGCGTTTCAGGTCGTGTTGCCCAAGCCATCGCTCAGAAAATTCATAAGATTGGG
AGTCATGGTCAGGTTTTGGCCATCAGTCACCTTCCGCAAGTTATTGCAATTGCTGATTATCAGTTCTTTATCTCTAAGGA
AAGTGATAATGAGACAACTGTCTCTCGTGTGCGTCTCTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAATGTGACGGAGGCTGCCTTGAGCCAAGCAAGAGCCTTGTTAAAGGTAGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.805

100

0.451