Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HSISS4_RS04025 Genome accession   NZ_CP013216
Coordinates   827523..829724 (+) Length   733 a.a.
NCBI ID   WP_037620351.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 822523..834724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS04000 (HSISS4_00760) hflX 822999..824237 (+) 1239 WP_021144311.1 GTPase HflX -
  HSISS4_RS04005 (HSISS4_00761) - 824230..824871 (+) 642 WP_021144310.1 hypothetical protein -
  HSISS4_RS04010 (HSISS4_00762) rnz 824903..825832 (+) 930 WP_002884122.1 ribonuclease Z -
  HSISS4_RS04015 (HSISS4_00763) - 825832..826599 (+) 768 WP_021144308.1 SDR family NAD(P)-dependent oxidoreductase -
  HSISS4_RS04020 (HSISS4_00764) - 826810..827214 (+) 405 WP_021144307.1 GNAT family N-acetyltransferase -
  HSISS4_RS04025 (HSISS4_00765) recJ 827523..829724 (+) 2202 WP_037620351.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HSISS4_RS04030 (HSISS4_00766) - 829845..830363 (+) 519 WP_004182660.1 adenine phosphoribosyltransferase -
  HSISS4_RS04035 (HSISS4_00767) metA 830536..831480 (+) 945 WP_021144305.1 homoserine O-acetyltransferase MetA -
  HSISS4_RS04040 (HSISS4_00768) - 831552..832250 (+) 699 WP_002890756.1 DnaD domain-containing protein -
  HSISS4_RS04045 (HSISS4_00769) nth 832250..832894 (+) 645 WP_021144303.1 endonuclease III -
  HSISS4_RS04050 (HSISS4_00770) - 833022..833783 (+) 762 WP_002890759.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82156.27 Da        Isoelectric Point: 4.3290

>NTDB_id=139487 HSISS4_RS04025 WP_037620351.1 827523..829724(+) (recJ) [Streptococcus salivarius strain HSISS4]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEEFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNDIDTSAKNTLNLDEELQLSELSLDSIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPTVEEASDTEPAVVLNTLPDSATEVKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSKIFQDLKHLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=139487 HSISS4_RS04025 WP_037620351.1 827523..829724(+) (recJ) [Streptococcus salivarius strain HSISS4]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCCTATGAACGTGGCGTGACGACAGAAGAAGCCCTTGAAGAGTTTCTTAAGGCTG
ATCTATCACATCTTCATGACCCTTATCTTCTTCATGATATGGACAAGGCAGTGGCTAGGATTCGTCAGGCCATTGAAAAT
TACGAGCAAATCTTAGTCTATGGAGACTATGATGCGGATGGGATGACATCAGCATCGATTGTCAAGGAAGCTCTTGAAAT
GATGGGCGCTGAGGCTCGAGTCTATTTGCCTAACCGTTTCACAGATGGTTATGGACCAAACGAAAGTGTCTACAAGTATT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGAGTAGCGGGTAATGAGGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCATCATAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCGGATGCCGATTATCCTTTTAAATATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGCACCATTGCTGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTAGGTCTGGAAATTCTCAAGACTACTGAGCGTATTGGACTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCAACAACGATTTCCGAAGAAACGGTAGGCTTTAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTACTGACTGGATTTGATGATGAGGAAGCTCAAGCCATTGCTTTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGCGTCCTCGGTATTGTGGCAGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGATCAGCCCGTAGTTTGGAATCGATTAATATCTTCCATGCTCTTGATGAC
CACCGAGATATCTTTACTGCTTTTGGAGGACACGCTGGAGCAGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGCCATTATGTCTACGATAATGACATTGATACAAGTGCCAAAAATACGCTTAATTTAGATGAGGAGC
TTCAACTCAGCGAGCTTAGCTTGGATAGCATTAAGAGCCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTTAA
ACAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTACTTCAAGAATTCCAACAGGCTCAGGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTCCAGCTCATGCTAGAAGATGCGCGTGTAGAT
GGTGTTCAATTATTTGATTTTCGCTCAAAAAACATGGCACTGCCTGAAGGCCTACCAACGGTAGAAGAAGCATCAGACAC
TGAACCTGCGGTTGTCCTCAACACCTTACCTGATTCAGCGACAGAAGTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATTTATTTTAAGAATAGTATTAAGGAAGCCTATTATCTGACAGGTTATGGAACTAGAGAGCAATTTGCAAGACTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTTCGCTATAAACTGGATGAGCTCAGTCATTACCTTAAAATCGATAAGAT
ACTTCTGATTAAGATGATTCAGATTTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGCAAGATTTTCCAAGATCTTAAACATCTCGTCAAGTTCCAAGAACTTATGGCT
TTAGGGACACCACAAGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(585-731)

DHHA1 domain (DHHA1)

(317-431)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.527

100

0.678
  recJ Bacillus subtilis subsp. subtilis str. 168

37.931

100

0.405