Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SD98_RS00175 Genome accession   NZ_CP010577
Coordinates   29666..29950 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 24666..34950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD98_RS00140 (SD98_00140) tmk 24858..25484 (+) 627 WP_000677218.1 dTMP kinase -
  SD98_RS00145 (SD98_00145) holB 25520..26503 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  SD98_RS00150 (SD98_00150) - 26509..27336 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  SD98_RS00155 (SD98_00155) yabA 27351..27701 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  SD98_RS00160 (SD98_00160) - 27784..28524 (+) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SD98_RS00165 (SD98_00165) - 28511..28801 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  SD98_RS00170 (SD98_00170) rsmI 28770..29645 (+) 876 WP_016078236.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SD98_RS00175 (SD98_00175) abrB 29666..29950 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SD98_RS00180 (SD98_00180) metG 30410..32419 (+) 2010 WP_003255999.1 methionine--tRNA ligase -
  SD98_RS00185 (SD98_00185) - 32586..33353 (+) 768 WP_000895845.1 TatD family hydrolase -
  SD98_RS00190 (SD98_00190) rnmV 33569..34126 (+) 558 WP_000692841.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=139340 SD98_RS00175 WP_000843036.1 29666..29950(-) (abrB) [Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=139340 SD98_RS00175 WP_000843036.1 29666..29950(-) (abrB) [Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment