Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SB45_RS06950 Genome accession   NZ_CP010556
Coordinates   1364287..1364571 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-H15     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359287..1369571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB45_RS06930 (SB45_06930) - 1360522..1361442 (+) 921 WP_043867056.1 ketopantoate reductase family protein -
  SB45_RS06935 (SB45_06935) - 1361472..1362704 (-) 1233 WP_043867057.1 aminopeptidase -
  SB45_RS19625 - 1362805..1362939 (-) 135 WP_003154559.1 protein YkpC -
  SB45_RS06940 (SB45_06940) mreBH 1363011..1364018 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  SB45_RS06950 (SB45_06950) abrB 1364287..1364571 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SB45_RS06955 (SB45_06955) - 1364744..1366048 (+) 1305 WP_014304932.1 ATP-binding protein -
  SB45_RS06960 (SB45_06960) - 1366050..1366877 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase family protein -
  SB45_RS06965 (SB45_06965) ktrC 1366918..1367583 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  SB45_RS06970 (SB45_06970) ade 1367732..1369465 (+) 1734 WP_043867058.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=139252 SB45_RS06950 WP_024085249.1 1364287..1364571(+) (abrB) [Bacillus velezensis strain L-H15]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=139252 SB45_RS06950 WP_024085249.1 1364287..1364571(+) (abrB) [Bacillus velezensis strain L-H15]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment