Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   SB45_RS06840 Genome accession   NZ_CP010556
Coordinates   1343779..1344375 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-H15     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338779..1349375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB45_RS06810 (SB45_06810) - 1338993..1339448 (+) 456 WP_003154599.1 flavodoxin -
  SB45_RS06815 (SB45_06815) dapD 1339530..1340240 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SB45_RS06820 (SB45_06820) - 1340311..1341435 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  SB45_RS06825 (SB45_06825) - 1341496..1341741 (+) 246 WP_003154596.1 YkuS family protein -
  SB45_RS06830 (SB45_06830) - 1341775..1342581 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  SB45_RS06835 (SB45_06835) - 1342869..1343327 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  SB45_RS06840 (SB45_06840) rok 1343779..1344375 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  SB45_RS06845 (SB45_06845) - 1344396..1345388 (-) 993 WP_043867052.1 hypothetical protein -
  SB45_RS06850 (SB45_06850) - 1345534..1346136 (+) 603 WP_043867053.1 molybdenum cofactor guanylyltransferase -
  SB45_RS06855 (SB45_06855) - 1346188..1347207 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  SB45_RS06860 (SB45_06860) glp 1347225..1348517 (+) 1293 WP_043867054.1 gephyrin-like molybdotransferase Glp -
  SB45_RS06865 (SB45_06865) mobB 1348478..1348999 (+) 522 WP_041481858.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=139251 SB45_RS06840 WP_003154591.1 1343779..1344375(+) (rok) [Bacillus velezensis strain L-H15]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=139251 SB45_RS06840 WP_003154591.1 1343779..1344375(+) (rok) [Bacillus velezensis strain L-H15]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment