Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PG1C_RS06895 Genome accession   NZ_CP010554
Coordinates   1391503..1392867 (+) Length   454 a.a.
NCBI ID   WP_202636730.1    Uniprot ID   A0A0C5JCA8
Organism   Rugosibacter aromaticivorans strain Ca6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1386503..1397867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG1C_RS06870 (PG1C_06735) - 1386833..1387447 (+) 615 WP_202636726.1 LemA family protein -
  PG1C_RS14755 (PG1C_06740) - 1387456..1388337 (+) 882 WP_257719920.1 TPM domain-containing protein -
  PG1C_RS06880 (PG1C_06745) - 1388339..1388836 (+) 498 WP_202636727.1 TPM domain-containing protein -
  PG1C_RS06885 (PG1C_06750) lplT 1388895..1390157 (-) 1263 WP_202636728.1 lysophospholipid transporter LplT -
  PG1C_RS06890 (PG1C_06755) alr 1390413..1391486 (+) 1074 WP_202636729.1 alanine racemase -
  PG1C_RS06895 (PG1C_06760) radA 1391503..1392867 (+) 1365 WP_202636730.1 DNA repair protein RadA Machinery gene
  PG1C_RS06900 (PG1C_06765) - 1392905..1393321 (+) 417 WP_202636731.1 hypothetical protein -
  PG1C_RS06905 (PG1C_06770) - 1393263..1393721 (+) 459 WP_202636732.1 helix-turn-helix domain-containing protein -
  PG1C_RS06910 - 1393718..1394248 (+) 531 WP_202636733.1 DUF6941 family protein -
  PG1C_RS06915 (PG1C_06780) - 1394510..1394722 (+) 213 WP_202636734.1 addiction module protein -
  PG1C_RS06920 (PG1C_06785) - 1394719..1395045 (+) 327 WP_202636736.1 type II toxin-antitoxin system RelE/ParE family toxin -
  PG1C_RS06925 (PG1C_06790) - 1395045..1397525 (+) 2481 WP_202636738.1 ABC transporter permease -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48160.66 Da        Isoelectric Point: 7.3312

>NTDB_id=139181 PG1C_RS06895 WP_202636730.1 1391503..1392867(+) (radA) [Rugosibacter aromaticivorans strain Ca6]
MAKPKSVYSCTECGATAPKWQGQCPGCGQWNTLVEAVMEAATPAGRSFASLAGVSNLQTLAKIRPREEPRQPTGIEEFDR
VLGGGLVAGGVVLIGGDPGIGKSTLLLQALARLAQTNENVLYVSGEESAEQVALRSQRLQLDVGGMQILTEINLEKILAA
LIDARPVVAVIDSIQTLWSDALQSAPGSVAQVRECSAQLTRFAKQSGTCIILVGHVTKDGSLAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLRGVSNPSALFLSQHSLDVAGSCVLVTQEGTRPLLVEIQALVDTAFGNP
RRLTVGLEQNRLAMLLAVLHRHAGVVCSDQDVFVNAVGGVKIAEPAADLAVLLAIVSSLRNKPLPGKLVVFGEIGLAGEI
RPAPRGQERLKEAAKLGFTHAMVPKANAPKQAIKGIEVIAVDRVEEAIEKMRGE

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=139181 PG1C_RS06895 WP_202636730.1 1391503..1392867(+) (radA) [Rugosibacter aromaticivorans strain Ca6]
ATGGCTAAACCAAAATCCGTTTATTCGTGCACCGAGTGTGGCGCCACCGCGCCGAAATGGCAGGGCCAGTGCCCCGGTTG
CGGGCAATGGAACACGCTGGTCGAAGCGGTAATGGAAGCAGCCACACCGGCCGGGCGCAGTTTTGCGTCGCTTGCCGGGG
TGAGTAACTTGCAAACCCTGGCCAAGATTCGTCCGCGCGAAGAGCCGCGCCAGCCGACGGGCATAGAAGAATTCGACCGC
GTGCTGGGCGGCGGTCTGGTCGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGTATCGGTAAATCCACCTTGCTGCT
GCAAGCCCTGGCACGTCTGGCGCAGACCAATGAAAACGTGTTGTATGTCTCAGGCGAGGAATCGGCCGAGCAAGTGGCCT
TGCGCTCGCAGCGTCTGCAACTGGATGTGGGCGGCATGCAAATCCTGACCGAAATCAATCTGGAAAAAATTCTCGCCGCG
CTGATTGACGCACGCCCTGTCGTGGCGGTGATTGATTCGATTCAAACCCTGTGGTCGGACGCCCTGCAATCCGCGCCGGG
GTCGGTGGCGCAAGTGCGTGAATGCTCGGCGCAGCTCACGCGCTTTGCCAAGCAAAGCGGCACCTGCATCATTCTCGTCG
GCCACGTCACCAAAGATGGCTCGCTTGCCGGGCCGCGCGTGCTCGAACACATAGTGGACACCGTGTTGTATTTCGAGGGT
GATACGCATTCGAGTTTTCGTCTGGTGCGCGCGTTCAAAAATCGCTTCGGCGCGGTGAATGAACTCGGCGTGTTCGCCAT
GACAGAAAAAGGCTTGCGCGGCGTGTCCAACCCGTCGGCCTTGTTCCTGTCGCAACACTCGCTGGATGTTGCCGGTTCCT
GCGTGCTGGTCACGCAGGAAGGCACGCGTCCTTTGCTGGTCGAAATCCAGGCGTTGGTCGATACGGCGTTTGGTAATCCA
CGGCGCTTGACCGTGGGGCTGGAGCAGAATCGGCTGGCGATGCTGCTGGCCGTATTGCATCGCCATGCCGGCGTGGTGTG
TTCCGATCAGGATGTGTTCGTCAATGCCGTTGGCGGCGTAAAAATTGCGGAACCGGCGGCTGACTTGGCCGTGCTGCTGG
CGATTGTTTCATCGCTCAGAAACAAGCCGCTGCCCGGCAAACTCGTGGTGTTTGGCGAAATTGGCCTGGCCGGTGAAATC
CGCCCCGCCCCGCGCGGGCAGGAGCGACTGAAAGAAGCCGCCAAGCTCGGCTTCACCCACGCGATGGTGCCCAAAGCCAA
TGCGCCCAAGCAGGCAATCAAGGGCATTGAAGTGATTGCGGTGGATCGGGTGGAAGAGGCGATTGAGAAAATGCGGGGGG
AGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

KaiC (ATPase)

(72-250)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C5JCA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.873

100

0.513
  radA Streptococcus mitis NCTC 12261

47.817

100

0.482
  radA Streptococcus mitis SK321

47.817

100

0.482
  radA Streptococcus pneumoniae TIGR4

48.238

100

0.482
  radA Streptococcus pneumoniae R6

48.238

100

0.482
  radA Streptococcus pneumoniae Rx1

48.238

100

0.482
  radA Streptococcus pneumoniae D39

48.238

100

0.482

Multiple sequence alignment