Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RR42_RS06115 Genome accession   NZ_CP010536
Coordinates   1341745..1344183 (+) Length   812 a.a.
NCBI ID   WP_043344913.1    Uniprot ID   A0A0C4Y6P1
Organism   Cupriavidus basilensis strain 4G11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1336745..1349183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR42_RS06095 (RR42_m1260) - 1337484..1338608 (-) 1125 WP_043351476.1 hypothetical protein -
  RR42_RS06100 (RR42_m1261) - 1338769..1340019 (+) 1251 WP_043344906.1 lipoprotein-releasing ABC transporter permease subunit -
  RR42_RS06105 (RR42_m1262) lolD 1340012..1340761 (+) 750 WP_043344908.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RR42_RS06110 (RR42_m1263) - 1340790..1341671 (+) 882 WP_043344910.1 TatD family hydrolase -
  RR42_RS06115 (RR42_m1264) comA 1341745..1344183 (+) 2439 WP_043344913.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RR42_RS06120 - 1344095..1345033 (-) 939 WP_043344915.1 MurR/RpiR family transcriptional regulator -
  RR42_RS06125 (RR42_m1265) edd 1345359..1347245 (+) 1887 WP_043344917.1 phosphogluconate dehydratase -
  RR42_RS06130 (RR42_m1266) - 1347433..1347942 (+) 510 WP_043344920.1 gluconokinase -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 87311.62 Da        Isoelectric Point: 11.0877

>NTDB_id=139145 RR42_RS06115 WP_043344913.1 1341745..1344183(+) (comA) [Cupriavidus basilensis strain 4G11]
MRLFLLAFVAGCWWLQQQGSLPRGGAVWVLAAAGLLAAALALCLRTRWPGWARVAWIVLSLLAGFGCSAWRAEVRLAQRL
APGLEGVDLQLSGVVAGLPAQAARGLRFVFALDDAAAMPPRVLLGWEDAPASLRPGERYVFTVRLRQPHGLANPHGFDYE
FWLMAAGLGATGYVRDAIGEPQDAVGERLAWRIARWRAQVRDHVLQSLPPDARFAPVLAALVVGDQHGIQQRDWTVFTRT
GIGHLISISGLHITMISGLFSSIVYWLWRHSFGLGRWLPRPLPLWWPARRAALVGAVIAALVYGLLAGMQVPALRTVSML
VVAALALWSGRTPPASLVLAWAAFVAIGLDPWAVLSPGFWLSFGAVGVIFLAAAQPANQSAPTRWQRVRASLAQAARTQW
CVTIGLVPLTLLLFQQVSVISPLANAAAIPLISLLVTPMALLAAAMPAPLAGWLLSPAHLLLHWLVLGLEWLSALPWAVW
QAARAGPVALALAVLGSLLLLAPVPCGVRARLHGVVLLLPMVLAGRQPVAHGEFRATAIDIGQGTAVLVETRSRVLLYDA
GPAYGWGAARGEPGNSAGARDIVPFLRSAGVRRLDTLVISHEDADHAGGARDIMAALPVDSLLSGAPQGHRLLVPPASAA
HLEAQPCEAGQQWEWDGVRFAMLHPLPGNAQNAAINSNARSCVLKVAGSARSLLLTGDIGRRDEAALLARLSTQDLRADF
LQVPHHGSNTSSSGAFLAVVAPEVALFQVGYRNRHRHPRPEIWGRYGSHEIARYRSDETGAVQLTTRGESYALQAYRQHA
RRYWRAAPPAPR

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=139145 RR42_RS06115 WP_043344913.1 1341745..1344183(+) (comA) [Cupriavidus basilensis strain 4G11]
ATGCGTCTGTTTTTGCTCGCCTTCGTGGCGGGCTGCTGGTGGCTGCAGCAACAAGGCTCGCTGCCGCGTGGCGGCGCGGT
GTGGGTGTTGGCGGCTGCCGGGCTCCTGGCGGCCGCGCTTGCGCTGTGCCTGCGCACACGCTGGCCTGGCTGGGCGCGGG
TGGCCTGGATCGTATTGTCGCTGCTGGCTGGTTTCGGCTGTTCGGCGTGGCGCGCCGAGGTTCGTCTGGCGCAGCGGCTG
GCACCCGGGCTGGAAGGGGTCGACCTGCAGCTGAGCGGCGTGGTGGCCGGGCTGCCGGCGCAGGCCGCGCGCGGCCTGCG
CTTCGTATTCGCGCTCGACGATGCGGCGGCCATGCCGCCCCGCGTCTTGCTGGGCTGGGAAGATGCCCCGGCCAGCTTGC
GGCCGGGCGAGCGCTACGTCTTCACCGTGCGCTTGCGCCAGCCCCATGGCCTGGCCAACCCGCATGGTTTCGATTACGAA
TTCTGGCTGATGGCGGCCGGGCTTGGCGCCACCGGCTACGTGCGCGACGCCATCGGCGAGCCGCAGGACGCCGTCGGCGA
ACGGCTCGCGTGGCGGATCGCGCGATGGCGGGCGCAGGTGCGCGATCACGTCTTGCAAAGCCTGCCGCCCGATGCCCGCT
TCGCCCCGGTGCTGGCGGCCCTGGTGGTGGGCGATCAGCACGGCATCCAGCAGCGGGACTGGACCGTGTTCACGCGCACC
GGCATCGGCCACCTGATCAGCATTTCCGGCCTGCATATCACCATGATTTCCGGCCTGTTCTCCAGCATCGTCTATTGGCT
GTGGCGGCATTCGTTCGGGCTCGGGCGATGGCTGCCGCGGCCCTTGCCGCTGTGGTGGCCGGCGCGGCGCGCCGCGCTGG
TGGGCGCGGTGATCGCGGCCCTCGTTTACGGCCTGCTGGCGGGCATGCAGGTGCCGGCGCTGCGCACCGTGTCGATGCTG
GTGGTGGCGGCGCTGGCGCTATGGAGCGGGCGCACGCCGCCGGCCTCGCTGGTGCTGGCCTGGGCGGCGTTCGTGGCGAT
CGGGCTCGACCCCTGGGCTGTGCTGTCGCCCGGGTTCTGGCTTTCGTTTGGCGCGGTGGGCGTGATCTTCCTGGCCGCGG
CGCAACCGGCCAATCAGTCCGCGCCGACGCGTTGGCAGCGTGTTCGCGCCAGCCTTGCGCAGGCGGCGCGCACGCAATGG
TGCGTCACTATCGGGCTGGTGCCGCTGACTCTGCTGCTGTTTCAGCAGGTCTCGGTGATTTCGCCGCTGGCCAATGCGGC
GGCGATCCCGCTGATCAGCCTGCTGGTGACGCCCATGGCCTTGCTGGCGGCGGCGATGCCCGCGCCGCTGGCGGGCTGGC
TGCTCAGCCCCGCGCATCTGCTGCTGCACTGGCTTGTGCTGGGCCTGGAGTGGCTGTCGGCGCTGCCGTGGGCGGTGTGG
CAGGCCGCGCGCGCCGGGCCAGTGGCACTGGCGCTGGCGGTGCTGGGCTCGCTGCTGTTGCTGGCGCCCGTGCCCTGTGG
CGTGCGCGCGCGCCTGCATGGCGTGGTACTGCTGTTGCCGATGGTGCTGGCGGGAAGGCAGCCAGTGGCGCACGGGGAGT
TTCGCGCCACCGCGATCGATATCGGGCAGGGCACGGCGGTACTGGTGGAGACGCGCTCGCGCGTGCTGCTCTACGATGCC
GGGCCGGCTTACGGCTGGGGCGCCGCGCGCGGCGAACCGGGCAACAGCGCCGGCGCGCGGGACATCGTGCCGTTCCTGCG
CAGCGCGGGGGTGCGCAGGCTGGACACGCTGGTGATCAGCCATGAAGACGCGGACCACGCGGGCGGTGCGCGCGACATCA
TGGCGGCGCTGCCGGTGGACAGCCTGCTATCGGGCGCGCCGCAGGGACATCGGCTGCTGGTGCCACCGGCGAGCGCCGCG
CACCTGGAGGCGCAGCCTTGCGAGGCGGGGCAGCAGTGGGAGTGGGATGGCGTGCGCTTTGCCATGCTGCATCCCTTGCC
GGGCAACGCGCAGAATGCCGCCATCAACAGCAATGCGCGCAGTTGCGTGCTCAAGGTGGCGGGTAGCGCGCGCAGCCTGC
TGCTGACCGGCGATATCGGCCGGCGCGACGAGGCGGCGCTGCTGGCACGCCTGTCCACGCAAGACTTGCGCGCGGACTTC
CTGCAGGTGCCGCATCACGGCAGCAACACCTCATCGAGCGGCGCGTTCCTGGCCGTGGTGGCGCCGGAGGTCGCGCTGTT
CCAGGTGGGCTACCGCAACCGCCACCGGCATCCCCGGCCCGAGATCTGGGGCCGCTACGGATCGCACGAGATCGCCCGCT
ATCGCAGCGACGAGACTGGCGCGGTCCAGCTTACGACGCGCGGCGAGTCTTACGCGCTGCAGGCTTACCGCCAGCACGCG
CGGCGCTACTGGCGCGCGGCGCCGCCTGCGCCTCGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(221-501)

Metallo-beta-lactamase superfamily (Lactamase_B)

(542-621)

Domain of unknown function (DUF4131) (DUF4131)

(27-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C4Y6P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

48.757

100

0.507

Multiple sequence alignment