Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SB48_RS17230 Genome accession   NZ_CP010525
Coordinates   3522634..3524004 (-) Length   456 a.a.
NCBI ID   WP_035182978.1    Uniprot ID   A0AAN0T9W8
Organism   Heyndrickxia coagulans strain HM-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3517634..3529004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB48_RS17210 (SB48_HM08orf06495) gltX 3517963..3519423 (-) 1461 WP_035182972.1 glutamate--tRNA ligase -
  SB48_RS17215 (SB48_HM08orf06501) ispF 3519976..3520452 (-) 477 WP_014096523.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  SB48_RS17220 (SB48_HM08orf06502) ispD 3520455..3521135 (-) 681 WP_014096524.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  SB48_RS17225 (SB48_HM08orf06503) - 3521202..3522287 (-) 1086 WP_014096525.1 PIN/TRAM domain-containing protein -
  SB48_RS17230 (SB48_HM08orf06506) radA 3522634..3524004 (-) 1371 WP_035182978.1 DNA repair protein RadA Machinery gene
  SB48_RS17235 (SB48_HM08orf06507) clpC 3524237..3526687 (-) 2451 WP_014096528.1 ATP-dependent protease ATP-binding subunit ClpC -
  SB48_RS17240 (SB48_HM08orf06508) - 3526704..3527771 (-) 1068 WP_014096529.1 protein arginine kinase -
  SB48_RS17245 (SB48_HM08orf06510) - 3527771..3528316 (-) 546 WP_014096530.1 UvrB/UvrC motif-containing protein -
  SB48_RS17250 (SB48_HM08orf06511) - 3528336..3528797 (-) 462 WP_013858048.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49791.21 Da        Isoelectric Point: 7.4246

>NTDB_id=139052 SB48_RS17230 WP_035182978.1 3522634..3524004(-) (radA) [Heyndrickxia coagulans strain HM-08]
MAKKTVKFVCQNCGYESPKWMGKCPQCSQWNQMVEEAETPKRRGFFLHPEPGNETKAAPITSIESKEEKRTKVDFGELNR
VLGGGIVAGSLVLIGGDPGIGKSTLLLQVSSQLAKHGLNVLYISGEESAKQTKLRADRLNIHTDHLYVLPETDLSVIQQA
IDELNPGFVVIDSIQTIYHPEIQSAPGSVSQVRETTAQLMRTAKTKNVAIFIVGHVTKEGSIAGPRVLEHMVDTVLYFEG
ERHNAYRILRAVKNRFGSTNEIAILEMKESGLEEVQNPSEIFLEERTKGAAGSTVVASIEGTRPVLVEIQALLAPTFFNM
PRRMASGIDYNRVTLIMAVLEKRAGLLIQNQDAYLKVAGGLKVDEPAVDLAVAVSVASSFRDKPTNADDCIIGEVGLTGE
VRRVSRIEQRVQEAAKLGFRRAIIPKNNMGGWTPPKEIQVIGVSTIQEALQAALGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=139052 SB48_RS17230 WP_035182978.1 3522634..3524004(-) (radA) [Heyndrickxia coagulans strain HM-08]
ATGGCAAAAAAAACCGTAAAGTTTGTTTGCCAGAACTGCGGCTACGAGTCGCCAAAATGGATGGGAAAGTGCCCGCAATG
CAGCCAGTGGAACCAGATGGTGGAGGAAGCGGAGACGCCAAAACGGAGGGGCTTTTTTTTACATCCGGAGCCTGGAAATG
AAACCAAAGCGGCACCTATTACGTCTATAGAGTCTAAAGAAGAAAAAAGGACAAAGGTGGATTTTGGAGAGCTGAACCGT
GTCCTCGGCGGCGGCATTGTTGCCGGATCACTTGTTTTGATCGGCGGGGATCCCGGGATCGGCAAATCAACGCTGCTTTT
GCAAGTGTCATCACAACTGGCAAAGCACGGGTTAAATGTACTGTATATTTCCGGGGAGGAATCGGCGAAACAGACGAAGT
TAAGGGCGGATCGGTTAAACATCCATACCGACCATCTTTATGTGCTGCCGGAAACGGACCTTTCCGTGATCCAGCAGGCG
ATAGATGAACTGAATCCCGGCTTTGTTGTCATTGATTCCATCCAGACGATTTACCATCCGGAAATCCAGTCTGCGCCGGG
CAGTGTGTCGCAAGTGAGGGAAACGACTGCACAGCTGATGCGGACGGCAAAAACAAAAAACGTGGCCATCTTCATTGTCG
GCCACGTGACAAAAGAAGGCTCCATTGCCGGTCCGCGCGTGCTTGAACATATGGTGGATACGGTCCTGTATTTTGAAGGT
GAACGCCATAACGCCTACCGGATATTAAGGGCGGTCAAAAACCGCTTTGGTTCGACGAATGAAATTGCGATTTTGGAAAT
GAAAGAATCCGGTTTGGAAGAAGTCCAGAACCCTTCCGAAATTTTTCTGGAAGAACGGACAAAAGGTGCAGCCGGTTCTA
CCGTGGTGGCTTCCATTGAGGGGACGCGCCCGGTCCTTGTCGAGATCCAGGCGCTGTTGGCCCCGACGTTTTTCAATATG
CCGCGGCGGATGGCATCCGGGATTGACTATAACCGTGTCACGCTGATTATGGCGGTGCTTGAAAAACGGGCCGGTCTTTT
GATTCAGAACCAGGATGCTTATTTAAAAGTCGCCGGCGGCCTGAAAGTGGATGAACCGGCAGTGGATTTGGCAGTTGCTG
TCAGCGTGGCATCCAGTTTTCGCGACAAGCCGACAAATGCGGATGACTGCATTATCGGAGAGGTCGGGCTGACGGGGGAA
GTCAGGCGGGTGTCCAGGATTGAGCAGCGCGTCCAGGAAGCGGCAAAACTTGGTTTCCGGCGGGCGATCATCCCGAAAAA
TAATATGGGCGGGTGGACGCCGCCAAAAGAGATTCAAGTGATCGGCGTCTCCACAATCCAGGAAGCTTTGCAAGCGGCAC
TCGGCGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.024

100

0.715
  radA Streptococcus mitis NCTC 12261

62.971

98.904

0.623
  radA Streptococcus mitis SK321

62.749

98.904

0.621
  radA Streptococcus pneumoniae Rx1

62.749

98.904

0.621
  radA Streptococcus pneumoniae D39

62.749

98.904

0.621
  radA Streptococcus pneumoniae R6

62.749

98.904

0.621
  radA Streptococcus pneumoniae TIGR4

62.749

98.904

0.621

Multiple sequence alignment