Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SB48_RS07940 Genome accession   NZ_CP010525
Coordinates   1639544..1641247 (+) Length   567 a.a.
NCBI ID   WP_014098069.1    Uniprot ID   A0AAU7WM09
Organism   Heyndrickxia coagulans strain HM-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1634544..1646247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB48_RS07915 (SB48_HM08orf02949) - 1634933..1635160 (+) 228 WP_013859605.1 exodeoxyribonuclease VII small subunit -
  SB48_RS07920 (SB48_HM08orf02951) - 1635163..1636032 (+) 870 WP_017550507.1 polyprenyl synthetase family protein -
  SB48_RS07925 (SB48_HM08orf02952) dxs 1636181..1638082 (+) 1902 WP_014098066.1 1-deoxy-D-xylulose-5-phosphate synthase -
  SB48_RS07930 (SB48_HM08orf02954) - 1638083..1638907 (+) 825 WP_014098067.1 TlyA family RNA methyltransferase -
  SB48_RS07935 (SB48_HM08orf02956) argR 1639077..1639526 (+) 450 WP_014098068.1 transcriptional regulator ArgR -
  SB48_RS07940 (SB48_HM08orf02957) recN 1639544..1641247 (+) 1704 WP_014098069.1 DNA repair protein RecN Machinery gene
  SB48_RS07945 (SB48_HM08orf02958) spoIVB 1641426..1642709 (+) 1284 WP_014098070.1 SpoIVB peptidase -
  SB48_RS07955 (SB48_HM08orf02960) spo0A 1642875..1643660 (+) 786 WP_014098072.1 sporulation transcription factor Spo0A -
  SB48_RS07960 (SB48_HM08orf02962) - 1643779..1644522 (+) 744 WP_014098073.1 glycerophosphodiester phosphodiesterase -
  SB48_RS07965 (SB48_HM08orf02965) - 1644532..1644774 (-) 243 WP_014098074.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64645.56 Da        Isoelectric Point: 4.8352

>NTDB_id=139026 SB48_RS07940 WP_014098069.1 1639544..1641247(+) (recN) [Heyndrickxia coagulans strain HM-08]
MLQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRGSSEFVRHGENRAEIEGLFLVEDGHPCMDRA
REFGIEIEEGMVILRRDISKTGKSVCRINGKLVTISVLREIGSTLIDIHSQHETQELLNETYHLPLLDQYGQSEIETALL
DYEKLYKKYEAVYGRLKRMNENDQQLAQRLDLIQFQHEEIQNAGLRLHEDEELAEEKRKLVNFERLFESLNTGYEALAGE
QHGLDWLSLAMSHLETAAEVDGELSDILESVQSCFYTLEDMSRSIRSRLDGLEFDPERLNVIEARLNEINQLKRKYGSSI
EEILEYGSKIEEEIESIVNRDHHVELLEKELQTVKRDLYLEAKQLSDLRKKWAEKLTKNIHSELKQLYMDKTKFEVRFLA
AADDYYEADDIPFRRDGLDQVEFYISTNPGEPLKPLAKTASGGELSRIMLALKTIFSRHQGITSVIFDEVDTGVSGRVAQ
AIAEKIYRISVHSQVLCITHLPQVAAMADTHLLIMKETEKERTRTKVKPLGQEEKIKEIGRMISGVEMTELTRQHAKELL
ELAEAIK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=139026 SB48_RS07940 WP_014098069.1 1639544..1641247(+) (recN) [Heyndrickxia coagulans strain HM-08]
TTGCTGCAGGAATTATCGATTAAAAATTTTGCCATTATTGATGCATTAACGCTTTCATTTGAAGCCGGGCTGACCGTCCT
GACAGGGGAGACCGGTGCCGGCAAATCGATTATTATCGATGCCATCCAGCTTCTAACAGGCGGGAGAGGGTCATCGGAGT
TCGTCCGGCACGGGGAAAACCGTGCTGAGATTGAGGGCTTATTTCTGGTCGAGGACGGTCATCCGTGCATGGATCGCGCC
CGCGAATTCGGCATTGAGATTGAGGAAGGCATGGTCATTTTGCGGCGCGATATATCGAAAACAGGGAAAAGCGTTTGCCG
CATCAACGGAAAACTTGTGACGATTTCGGTGCTGCGCGAAATCGGGTCGACTTTAATTGATATCCACAGCCAGCACGAAA
CGCAGGAACTGCTGAACGAAACGTACCATCTGCCACTGCTTGACCAGTACGGGCAAAGTGAGATTGAAACGGCTCTCCTT
GATTACGAAAAATTGTATAAAAAATACGAAGCCGTTTACGGGCGGTTAAAAAGAATGAATGAAAACGACCAGCAGCTCGC
CCAGCGCCTTGACCTCATCCAATTCCAGCATGAGGAAATCCAAAACGCCGGACTGAGGCTGCATGAAGACGAGGAATTAG
CGGAAGAAAAACGAAAACTCGTCAATTTTGAACGGCTGTTTGAATCATTGAATACGGGGTATGAAGCGCTTGCCGGGGAA
CAGCATGGCCTCGACTGGCTCAGCCTTGCCATGAGCCATCTTGAAACCGCGGCTGAAGTGGATGGCGAGCTCTCTGACAT
TTTGGAATCCGTCCAAAGTTGTTTTTATACGCTCGAAGACATGTCCCGCTCAATCCGTTCCCGGCTTGACGGACTTGAAT
TTGACCCGGAACGGCTTAACGTAATTGAAGCGCGGCTGAATGAGATCAACCAGTTAAAACGAAAATATGGTAGCTCGATC
GAAGAAATTCTGGAATACGGGTCCAAAATTGAAGAAGAAATCGAATCGATCGTAAACCGTGACCATCATGTGGAGCTTCT
AGAAAAAGAACTGCAAACGGTAAAACGCGATCTGTATTTGGAAGCCAAGCAGCTCAGCGATTTACGCAAAAAATGGGCGG
AAAAGCTGACTAAAAATATCCATTCCGAATTAAAGCAGCTGTATATGGATAAAACAAAGTTTGAAGTCCGTTTTCTTGCC
GCTGCTGATGATTATTATGAGGCGGATGACATTCCGTTCCGGCGCGACGGGCTCGACCAGGTTGAATTTTACATTTCCAC
CAATCCGGGCGAACCGCTAAAACCGCTCGCAAAAACCGCTTCGGGCGGAGAATTGTCGCGGATTATGCTGGCATTAAAAA
CGATATTTTCCCGGCACCAGGGGATCACTTCCGTCATTTTCGACGAAGTGGATACCGGCGTAAGCGGCCGCGTTGCGCAG
GCGATTGCGGAGAAAATTTACCGCATTTCGGTCCATTCGCAAGTCCTCTGCATTACCCATCTGCCGCAGGTTGCCGCCAT
GGCGGATACACATCTGTTGATCATGAAAGAGACTGAAAAGGAGAGAACGCGGACAAAAGTCAAGCCTTTAGGTCAGGAAG
AAAAAATTAAAGAAATCGGCCGTATGATTTCAGGCGTTGAAATGACAGAGTTGACAAGACAGCATGCGAAAGAGCTGCTC
GAACTGGCCGAAGCGATAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.162

100

0.598

Multiple sequence alignment