Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | SB48_RS07690 | Genome accession | NZ_CP010525 |
| Coordinates | 1595992..1597116 (+) | Length | 374 a.a. |
| NCBI ID | WP_014098021.1 | Uniprot ID | - |
| Organism | Heyndrickxia coagulans strain HM-08 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1590992..1602116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SB48_RS07660 (SB48_HM08orf02864) | - | 1592282..1592503 (+) | 222 | WP_013859652.1 | YqgQ family protein | - |
| SB48_RS07665 (SB48_HM08orf02865) | - | 1592496..1593464 (+) | 969 | WP_014098016.1 | ROK family glucokinase | - |
| SB48_RS17965 (SB48_HM08orf02867) | - | 1593769..1593942 (-) | 174 | WP_014098017.1 | DUF2759 domain-containing protein | - |
| SB48_RS07675 (SB48_HM08orf02868) | - | 1594072..1594701 (+) | 630 | WP_014098018.1 | MBL fold metallo-hydrolase | - |
| SB48_RS07680 (SB48_HM08orf02870) | - | 1594770..1595012 (-) | 243 | WP_014098019.1 | DUF2626 domain-containing protein | - |
| SB48_RS07685 (SB48_HM08orf02871) | - | 1595090..1595797 (-) | 708 | WP_014098020.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| SB48_RS07690 (SB48_HM08orf02872) | comGA | 1595992..1597116 (+) | 1125 | WP_014098021.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SB48_RS07695 (SB48_HM08orf02873) | comGB | 1597118..1598080 (+) | 963 | WP_035184586.1 | competence type IV pilus assembly protein ComGB | - |
| SB48_RS07700 (SB48_HM08orf02876) | comGC | 1598148..1598459 (+) | 312 | WP_013859645.1 | competence type IV pilus major pilin ComGC | - |
| SB48_RS07705 (SB48_HM08orf02877) | comGD | 1598456..1598899 (+) | 444 | WP_019720594.1 | competence type IV pilus minor pilin ComGD | - |
| SB48_RS07710 (SB48_HM08orf02879) | - | 1598886..1599194 (+) | 309 | WP_035184587.1 | type II secretion system protein | - |
| SB48_RS07715 (SB48_HM08orf02880) | comGF | 1599157..1599642 (+) | 486 | WP_035184588.1 | competence type IV pilus minor pilin ComGF | - |
| SB48_RS07720 (SB48_HM08orf02882) | comGG | 1599639..1600007 (+) | 369 | WP_014098027.1 | competence type IV pilus minor pilin ComGG | - |
| SB48_RS07725 (SB48_HM08orf02883) | - | 1600004..1600561 (+) | 558 | WP_014098028.1 | shikimate kinase | - |
| SB48_RS17970 (SB48_HM08orf02884) | - | 1600548..1600724 (+) | 177 | WP_014098029.1 | YqzE family protein | - |
| SB48_RS07730 (SB48_HM08orf02885) | - | 1600757..1601548 (-) | 792 | WP_014098030.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 374 a.a. Molecular weight: 42374.92 Da Isoelectric Point: 9.5494
>NTDB_id=139025 SB48_RS07690 WP_014098021.1 1595992..1597116(+) (comGA) [Heyndrickxia coagulans strain HM-08]
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEKFQLSQISLFPSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEH
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAIRASLTGHLVLTTLH
TRDAKGAIYRLMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVYYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTAGALSYPGR
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEKFQLSQISLFPSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEH
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAIRASLTGHLVLTTLH
TRDAKGAIYRLMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVYYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTAGALSYPGR
Nucleotide
Download Length: 1125 bp
>NTDB_id=139025 SB48_RS07690 WP_014098021.1 1595992..1597116(+) (comGA) [Heyndrickxia coagulans strain HM-08]
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGACAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTCGCCATG
AATGTTTTGCAGCAGACGATCTCCTTAAGAATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTTATTCGGAT
CTTGCCCCATGAAGAAAAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACAAAAAAATTAATGGCGCTGCTCA
ACCATTCGCATGGGATGCTGATTTTCAGCGGCCCGACTGGAAGCGGCAAGTCTACGACGATGTATACGCTTGTTGAGCAC
TGCGCAAAACGGTTTTTACGGAATGTGATTACACTGGAAGACCCTGTTGAAAAACAAAGCGACTCGTTTTTGCAGGTACA
GGTGAATGAAAAAGCAGGTATTACTTACAGCACAGGGCTGAAAGCGATTTTGCGCCATGATCCGGATATTATCCTGGTGG
GGGAAATCCGTGATGCCGAAACAGCAAGAATTGCGATCCGCGCATCACTCACCGGCCATCTCGTGCTGACGACATTGCAT
ACGCGTGACGCAAAGGGCGCGATTTACAGGCTGATGGAATTTGGGGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
AGTCAGCGCACAGCGGCTGATTACATTGCGATGCCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGAGAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGTTGAAAGAAGCA
AAGGGGGAACAAGTCTACTATCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGACAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTCGCCATG
AATGTTTTGCAGCAGACGATCTCCTTAAGAATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTTATTCGGAT
CTTGCCCCATGAAGAAAAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACAAAAAAATTAATGGCGCTGCTCA
ACCATTCGCATGGGATGCTGATTTTCAGCGGCCCGACTGGAAGCGGCAAGTCTACGACGATGTATACGCTTGTTGAGCAC
TGCGCAAAACGGTTTTTACGGAATGTGATTACACTGGAAGACCCTGTTGAAAAACAAAGCGACTCGTTTTTGCAGGTACA
GGTGAATGAAAAAGCAGGTATTACTTACAGCACAGGGCTGAAAGCGATTTTGCGCCATGATCCGGATATTATCCTGGTGG
GGGAAATCCGTGATGCCGAAACAGCAAGAATTGCGATCCGCGCATCACTCACCGGCCATCTCGTGCTGACGACATTGCAT
ACGCGTGACGCAAAGGGCGCGATTTACAGGCTGATGGAATTTGGGGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
AGTCAGCGCACAGCGGCTGATTACATTGCGATGCCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGAGAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGTTGAAAGAAGCA
AAGGGGGAACAAGTCTACTATCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
54.469 |
95.722 |
0.521 |