Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   SB48_RS03970 Genome accession   NZ_CP010525
Coordinates   854086..854895 (+) Length   269 a.a.
NCBI ID   WP_035183861.1    Uniprot ID   A0AAN0T4Y8
Organism   Heyndrickxia coagulans strain HM-08     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 849086..859895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB48_RS03945 (SB48_HM08orf01446) trpCF 849567..850991 (+) 1425 WP_035183852.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -
  SB48_RS03950 (SB48_HM08orf01447) trpB 850969..852174 (+) 1206 WP_035183854.1 tryptophan synthase subunit beta -
  SB48_RS03955 (SB48_HM08orf01448) - 852167..852571 (+) 405 WP_035183857.1 hypothetical protein -
  SB48_RS03960 (SB48_HM08orf01449) trpA 852564..853355 (+) 792 WP_014097355.1 tryptophan synthase subunit alpha -
  SB48_RS03965 (SB48_HM08orf01451) - 853614..853796 (-) 183 WP_017551419.1 YfhD family protein -
  SB48_RS18125 (SB48_HM08orf01453) - 853877..853999 (-) 123 WP_014097357.1 YfhE family protein -
  SB48_RS03970 (SB48_HM08orf01454) recX 854086..854895 (+) 810 WP_035183861.1 recombination regulator RecX Regulator
  SB48_RS03975 (SB48_HM08orf01455) - 855025..856248 (-) 1224 WP_013858393.1 IS110 family transposase -
  SB48_RS03985 (SB48_HM08orf01457) - 856659..856976 (+) 318 WP_035183866.1 YfhH family protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31245.12 Da        Isoelectric Point: 8.9930

>NTDB_id=139013 SB48_RS03970 WP_035183861.1 854086..854895(+) (recX) [Heyndrickxia coagulans strain HM-08]
MPVITKISVQKNNKERYNIFLDGQYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFAPEVIRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVIRRELQQKGIAPELVKKALEIFDADQQVEH
ALALAEKLSRQHARLSEKLLKQKVEQGLVVKGYPPEVISAAMAALPIEKDEEAEWEALLQHAEKAKRKYGRLSGYAYRQK
MKQFLYRKGFPVDLIDRYLREVLRCDVKG

Nucleotide


Download         Length: 810 bp        

>NTDB_id=139013 SB48_RS03970 WP_035183861.1 854086..854895(+) (recX) [Heyndrickxia coagulans strain HM-08]
GTGCCGGTCATTACAAAAATCTCAGTTCAAAAAAACAATAAAGAACGTTACAATATTTTTCTTGATGGACAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAAGGGAAGGAATTGGATGAGCTTGATATTGAAGCGATCC
TTGCCGAAGATGATATCCGGAAAGGCGTTAATACTGCCATCCATTTTCTTTCCTATCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCACCGGAAGTCATCCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
GGATGATGCGGAATTTGCCGCAAGTTTTGTACGAACACAAATGAACACAACACATAAAGGGCCTGTTGTTATTAGAAGGG
AACTCCAGCAAAAAGGCATTGCACCAGAGCTTGTGAAAAAGGCGCTTGAAATTTTTGATGCGGATCAGCAAGTGGAACAC
GCCCTTGCCCTTGCGGAAAAACTGTCCAGGCAGCATGCCCGGTTGTCAGAGAAGCTTTTAAAGCAAAAAGTGGAGCAGGG
GCTTGTCGTAAAAGGTTATCCGCCTGAAGTGATTTCCGCAGCGATGGCGGCGCTCCCTATTGAAAAGGATGAAGAAGCGG
AGTGGGAAGCCCTTCTTCAGCACGCTGAAAAAGCAAAGCGCAAATACGGTAGACTTTCGGGATATGCATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGAGAAGTCCTACGGTGTGATGT
CAAGGGTTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.107

97.026

0.506

Multiple sequence alignment