Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SC10_RS17025 Genome accession   NZ_CP010524
Coordinates   3415852..3416490 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain BL-09     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3410852..3421490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC10_RS16990 (SC10_B2orf05126) - 3412042..3412473 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  SC10_RS16995 (SC10_B2orf05127) - 3412473..3412814 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  SC10_RS17000 (SC10_B2orf05128) - 3412807..3414285 (+) 1479 WP_025809735.1 Na+/H+ antiporter subunit D -
  SC10_RS17005 (SC10_B2orf05130) - 3414291..3414767 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  SC10_RS17010 (SC10_B2orf05131) - 3414767..3415051 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  SC10_RS17015 (SC10_B2orf05133) mnhG 3415035..3415409 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  SC10_RS17020 (SC10_B2orf05134) - 3415446..3415835 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  SC10_RS17025 (SC10_B2orf05136) comA 3415852..3416490 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  SC10_RS17030 (SC10_B2orf05137) comP 3416577..3418892 (-) 2316 WP_020452789.1 sensor histidine kinase Regulator
  SC10_RS17035 (SC10_B2orf05138) comX 3418913..3419083 (-) 171 WP_020452790.1 competence pheromone ComX -
  SC10_RS17040 (SC10_B2orf05139) - 3419055..3419966 (-) 912 WP_035337591.1 polyprenyl synthetase family protein -
  SC10_RS17045 (SC10_B2orf05140) degQ 3420153..3420293 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  SC10_RS17050 (SC10_B2orf05142) - 3420905..3421126 (+) 222 WP_230368259.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=138988 SC10_RS17025 WP_003184849.1 3415852..3416490(-) (comA) [Bacillus paralicheniformis strain BL-09]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=138988 SC10_RS17025 WP_003184849.1 3415852..3416490(-) (comA) [Bacillus paralicheniformis strain BL-09]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATAACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment